New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3794011 =	29 (0.980)	4 (0.140)	4/230	NT	12.1%	coding (555/1191 nt)	PP_3355	beta‑ketothiolase
	?	NC_002947	3794035 =	31 (1.120)					coding (531/1191 nt)	PP_3355	beta‑ketothiolase

AGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCAGA  >  NC_002947/3793862‑3794159                                                                                                                                                      |                                                                                                                                                       cgccggtcgggttcaaggactttctctgggaagccctgtacgacccggctgccggcgtggacatgatcggtactgcggaaaacctggcccgtgcctatggcctggcgcgtgaaacggtggacgcgtgggccctgcgcagccatcagcggg                                                                                                                                                        >  1:204909‑M1/150‑150 (MQ=255)                   gcgTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCCGCCCTGCA‑‑CCTGGGCTTGc                                                                                                                                    <  2:274590/150‑1 (MQ=255)                             gCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCt                                                                                                                          >  2:425061/1‑150 (MQ=255)                               cGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGa                                                                                                                        <  1:295569/150‑1 (MQ=255)                                gtgggtggCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGAt                                                                                                                       <  2:121814/150‑1 (MQ=255)                                             cTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGc                                                                                                          >  1:63249/1‑150 (MQ=255)                                                         actcacGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCAc                                                                                              >  1:744372/1‑150 (MQ=255)                                                          tgccagccacgcGGCATTGCATTGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGa                                                                                                                        >  1:32966/6‑123 (MQ=39)                                                          tgccagccacgcGGCATTGCATTGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGa                                                                                                                        <  2:32966/118‑1 (MQ=39)                                                             acgccacgcGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCAc                                                                                                      <  2:547325/138‑1 (MQ=255)                                                             acgccacgcGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCAc                                                                                                      >  1:547325/1‑138 (MQ=255)                                                               gccacgcGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCACTGCC‑‑CCTGACCCGGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTc                                                                                        >  2:20522/1‑150 (MQ=255)                                                                 cacgcGGCATTGCATTGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCAc                                                                                      >  2:745050/1‑150 (MQ=255)                                                                              aatgcCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTc                                                                                                 >  2:477891/1‑126 (MQ=255)                                                                              aatgcCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTc                                                                                                 <  1:477891/126‑1 (MQ=255)                                                                                tgcCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAgg                                                                       >  2:159880/1‑150 (MQ=255)                                                                                   cgcgTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCAc                                                                    <  1:425061/150‑1 (MQ=255)                                                                                    gcgTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGTCCCACGCGCCCACCGGTTCACGCGCCGGGCCATAGGCACg                                                                   >  2:439618/1‑150 (MQ=255)                                                                                     tggcccgtgcctatggcctggcgcgtgaaacggtggacgcgtgggccctgcgcagccatcagcggGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGa                                                                                                                        <  1:342480‑M1/31‑1 (MQ=255)                                                                                     tggcccgtgcctatggcctggcgcgtgaaacggtggacgcgtgggccctgcgcagccatcagcggGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGa                                                                                                                        >  2:342480‑M1/66‑96 (MQ=255)                                                                                         ccgtgcctatggcctggcgcgtgaaacggtggacgcgtgggccctgcgcagccatcagcggGCCCTg                                                                                                                                                   <  1:279385‑M1/6‑1 (MQ=255)                                                                                         ccgtgcctatggcctggcgcgtgaaacggtggacgcgtgggccctgcgcagccatcagcggGCCCTg                                                                                                                                                   >  2:279385‑M1/62‑67 (MQ=255)                                                                                               aGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGtttt                                                        >  2:51953/1‑150 (MQ=255)                                                                                                    tCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCa                                                   <  2:94274/150‑1 (MQ=255)                                                                                                         cTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTAcc                                              >  2:544055/1‑150 (MQ=255)                                                                                                                 ccTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGt                                      <  2:653795/150‑1 (MQ=255)                                                                                                                          tGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCgg                             <  1:535311/150‑1 (MQ=255)                                                                                                                                  aCGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGttt                                                                                         <  2:387888/82‑1 (MQ=255)                                                                                                                                  aCGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGttt                                                                                         >  1:387888/1‑82 (MQ=255)                                                                                                                                     tgcgcagccatcagcggGCCCTGCAAGCCCAGG‑‑TGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTAc                                               >  2:597211‑M1/18‑121 (MQ=255)                                                                                                                                     tgcgcagccatcagcggGCCCTGCAAGCCCAGG‑‑TGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTAc                                               <  1:597211‑M1/104‑1 (MQ=255)                                                                                                                                          cTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCa                                         >  1:105629/1‑122 (MQ=255)                                                                                                                                          cTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCa                                         <  2:105629/122‑1 (MQ=255)                                                                                                                                           tcgtcgAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAgg            >  2:277541/1‑150 (MQ=255)                                                                                                                                              tcgAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCt         >  2:182052/1‑150 (MQ=255)                                                                                                                                                gAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTc       <  2:744372/150‑1 (MQ=255)                                                                                                                                                   ccAGCCCCGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTCTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCa    <  1:38597/150‑1 (MQ=255)                                                                                                                                                     aGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCaga  <  1:745050/150‑1 (MQ=255)                                                                                                                                                     aGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCaga  <  1:51953/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                       AGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCAGA  >  NC_002947/3793862‑3794159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.