New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3794011 =	29 (0.980)	4 (0.140)	4/230	NT	12.1%	coding (555/1191 nt)	PP_3355	beta‑ketothiolase
	?	NC_002947	3794035 =	31 (1.120)					coding (531/1191 nt)	PP_3355	beta‑ketothiolase

GCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCAGAGAAAGTCCTTGAACCCGACCGGCG  >  NC_002947/3793890‑3794183                                                                                                                                                    |                                                                                                                                                     gCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCt                                                                                                                                                  >  2:425061/1‑150 (MQ=255)   cGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGa                                                                                                                                                <  1:295569/150‑1 (MQ=255)    gtgggtggCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGAt                                                                                                                                               <  2:121814/150‑1 (MQ=255)                 cTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGc                                                                                                                                  >  1:63249/1‑150 (MQ=255)                             actcacGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCAc                                                                                                                      >  1:744372/1‑150 (MQ=255)                              tgccagccacgcGGCATTGCATTGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGa                                                                                                                                                >  1:32966/6‑123 (MQ=39)                              tgccagccacgcGGCATTGCATTGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGa                                                                                                                                                <  2:32966/118‑1 (MQ=39)                                 acgccacgcGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCAc                                                                                                                              <  2:547325/138‑1 (MQ=255)                                 acgccacgcGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCAc                                                                                                                              >  1:547325/1‑138 (MQ=255)                                   gccacgcGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCACTGCC‑‑CCTGACCCGGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTc                                                                                                                >  2:20522/1‑150 (MQ=255)                                     cacgcGGCATTGCATTGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCAc                                                                                                              >  2:745050/1‑150 (MQ=255)                                            gtactgcggaaaacctggcccgtgcctatggcctggcgcgtgaaacggtggacgcgtgggccctgcgcagccatcagcgggccctgcacctgggcttgcagggcCCGCTGATGGCTGCGCa                                                                                                                                      <  1:597211‑M2/17‑1 (MQ=255)                                            gtactgcggaaaacctggcccgtgcctatggcctggcgcgtgaaacggtggacgcgtgggccctgcgcagccatcagcgggccctgcacctgggcttgcagggcCCGCTGATGGCTGCGCa                                                                                                                                      >  2:597211‑M2/105‑121 (MQ=255)                                                  aatgcCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTc                                                                                                                         <  1:477891/126‑1 (MQ=255)                                                  aatgcCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTc                                                                                                                         >  2:477891/1‑126 (MQ=255)                                                    tgcCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAgg                                                                                               >  2:159880/1‑150 (MQ=255)                                                       cgcgTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCAc                                                                                            <  1:425061/150‑1 (MQ=255)                                                        gcgTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGTCCCACGCGCCCACCGGTTCACGCGCCGGGCCATAGGCACg                                                                                           >  2:439618/1‑150 (MQ=255)                                                         tggcccgtgcctatggcctggcgcgtgaaacggtggacgcgtgggccctgcgcagccatcagcggGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGa                                                                                                                                                >  2:342480‑M1/66‑96 (MQ=255)                                                         tggcccgtgcctatggcctggcgcgtgaaacggtggacgcgtgggccctgcgcagccatcagcggGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGa                                                                                                                                                <  1:342480‑M1/31‑1 (MQ=255)                                                                   aGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGtttt                                                                                >  2:51953/1‑150 (MQ=255)                                                                        tCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCa                                                                           <  2:94274/150‑1 (MQ=255)                                                                             cTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTAcc                                                                      >  2:544055/1‑150 (MQ=255)                                                                                     ccTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGt                                                              <  2:653795/150‑1 (MQ=255)                                                                                              tGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCgg                                                     <  1:535311/150‑1 (MQ=255)                                                                                                      aCGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGttt                                                                                                                 >  1:387888/1‑82 (MQ=255)                                                                                                      aCGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGttt                                                                                                                 <  2:387888/82‑1 (MQ=255)                                                                                                         tgcgcagccatcagcggGCCCTGCAAGCCCAGG‑‑TGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTAc                                                                       <  1:597211‑M1/104‑1 (MQ=255)                                                                                                         tgcgcagccatcagcggGCCCTGCAAGCCCAGG‑‑TGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTAc                                                                       >  2:597211‑M1/18‑121 (MQ=255)                                                                                                              cTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCa                                                                 >  1:105629/1‑122 (MQ=255)                                                                                                              cTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCa                                                                 <  2:105629/122‑1 (MQ=255)                                                                                                               tcgtcgAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAgg                                    >  2:277541/1‑150 (MQ=255)                                                                                                                  tcgAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCt                                 >  2:182052/1‑150 (MQ=255)                                                                                                                    gAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTc                               <  2:744372/150‑1 (MQ=255)                                                                                                                     tcagcgggccctgcaagcccaggtgcagggcCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCa                                                                                      >  2:342480‑M2/32‑96 (MQ=255)                                                                                                                     tcagcgggccctgcaagcccaggtgcagggcCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCa                                                                                      <  1:342480‑M2/65‑1 (MQ=255)                                                                                                                       ccAGCCCCGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTCTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCa                            <  1:38597/150‑1 (MQ=255)                                                                                                                         aGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCaga                          <  1:745050/150‑1 (MQ=255)                                                                                                                         aGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCaga                          <  1:51953/150‑1 (MQ=255)                                                                                                                           CCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTc                                                                               <  2:450502‑M1/95‑1 (MQ=255)                                                                                                                           CCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTc                                                                               >  1:450502‑M1/1‑95 (MQ=255)                                                                                                                             CTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCAGAGaaa                      <  2:30550‑M1/150‑1 (MQ=255)                                                                                                                             CTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGAAGCCGGGTCGTACAGGGCTTCCCAGAGaaa                      >  1:544055‑M1/1‑150 (MQ=255)                                                                                                                              TGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCAGAGAAAg                     <  2:694747‑M1/150‑1 (MQ=255)                                                                                                                                     cTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCAGAGAAAGTCCtt                >  2:332340/1‑150 (MQ=255)                                                                                                                                         gCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCAGAGAAAGTCCTTGAAc            >  1:360511/1‑150 (MQ=255)                                                                                                                                         gCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGCCCCACTAGGGCTTCCCAGAGAAAGTCCTTGAAc            <  1:20522/150‑1 (MQ=255)                                                                                                                                              cagggcCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACgg                                                                                          >  2:279385‑M2/7‑67 (MQ=255)                                                                                                                                              cagggcCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACgg                                                                                          <  1:279385‑M2/61‑1 (MQ=255)                                                                                                                                                   cCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCAGAGAAAGTCCTTGAACCCGACCGgcg  >  1:204909‑M2/2‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCA‑‑CCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACCGATCATGTCCACGCCGGCAGCCGGGTCGTACAGGGCTTCCCAGAGAAAGTCCTTGAACCCGACCGGCG  >  NC_002947/3793890‑3794183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.