New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3933475 =	19 (0.640)	5 (0.180)	4/232	NT	23.3%	coding (46/1710 nt)	PP_3466	ABC transporter permease/ATP‑binding protein
	?	NC_002947	3933493 =	15 (0.540)					coding (28/1710 nt)	PP_3466	ABC transporter permease/ATP‑binding protein

CGTTTGGTAATCCTTGGCCAGCAGCCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCCGCGGCGGCGGCCGAGACGTTG  >  NC_002947/3933332‑3933624                                                                                                                                                |                                                                                                                                                      cgccatcagggcaacgtctcggccgccgccgcggcactgggtatcagccgggcgacgctgtaccgcaagctcaagcagttgcgcggctgacgtgggcggcctgttcgcaaggctggtcgaatctagcgaccctgtactcatgcGCCAGGc                                                                                                                                                 >  1:744080‑M1/144‑150 (MQ=255)     atcagggcaacgtctcggccgccgccgcggcactgggtatcagccgggcgacgctgtaccgcaagctcaagcagttgcgcggctgacgtgggcggcctgttcgcaaggctggtggattccagcgaccctgtactcatgcGcc                                                                                                                                                     >  2:425362‑M1/140‑142 (MQ=255)     atcagggcaacgtctcggccgccgccgcggcactgggtatcagccgggcgacgctgtaccgcaagctcaagcagttgcgcggctgacgtgggcggcctgttcgcaaggctggtggattccagcgaccctgtactcatgcGcc                                                                                                                                                     <  1:425362‑M1/3‑1 (MQ=255)       gTAATCCTTGGCCAGCAGCCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGc                                                                                                                                           >  1:190416/1‑150 (MQ=255)       gTAATCCTTGGCCAGCAGCCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGc                                                                                                                                           <  1:407578/150‑1 (MQ=255)         aaTCCTTGGCCAGCAGCCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGATCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCt                                                                                                                                         <  1:61619/150‑1 (MQ=255)              ttGGCCAGCAGCCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGCCAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGgc                                                                                                                                      >  1:181426/1‑148 (MQ=255)              ttGGCCAGCAGCCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGgc                                                                                                                                      <  2:181426/148‑1 (MQ=255)                gtctcggccgccgccgcggcactgggtatcagccgggcgacgctgtaccgcaagctcaagcagttgcgcggctgacgtgggcggcctgttcgcaaggctggtggattccagcgaccctgtactcatgcGCCAGGCCAACGCCTGGCGCAt                                                                                                                                  >  2:755570‑M1/129‑150 (MQ=255)                ggCCAGCAGCCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCAt                                                                                                                                  <  1:189121/150‑1 (MQ=255)                        gcCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAg                                                                                                                          <  1:758208/150‑1 (MQ=255)                          cccTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAggg                                                                                                                        <  1:169127/150‑1 (MQ=255)                                    tCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAAt                                                                                                              >  1:702272/1‑150 (MQ=255)                                                   gccagGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGa                                                                                               >  2:55801/1‑150 (MQ=255)                                                               ccagcgccagcAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCATGCCAACGCCTGGCGCATGAGTACAg                                                                                                                          <  1:136220/111‑1 (MQ=255)                                                               ccagcgccagcAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCATGCCAACGCCTGGCGCATGAGTACAg                                                                                                                          >  2:136220/1‑111 (MQ=255)                                                                cagcgccagcAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACTCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAACCCACCAGCCTTGCGAACACGACGCCCAc                                                                                  >  1:213031/1‑150 (MQ=255)                                                                        gcagcGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGccc                                                                          >  2:331832/1‑149 (MQ=255)                                                                                            aaGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAACCCATAAAGCTATACCAACCTCCCGCGCATGAGTACTGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCg                                                      <  1:55801/150‑1 (MQ=255)                                                                                                        aGGCCGATGGCACGCCGATGGGGGCGCACGAACCAATCCCAGCAGGTCATCTCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGc                                          <  1:178151/150‑1 (MQ=255)                                                                                                        aGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGc                                          <  2:702272/150‑1 (MQ=255)                                                                                                           ccGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCg                                       <  2:613381/150‑1 (MQ=255)                                                                                                                         ttccagcgaccctgtactcatgcGCCAGGCGTTGGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTg                         <  2:95671‑M1/127‑1 (MQ=255)                                                                                                                            cagcgaccctgtactcatgtGCCAGGCCAACGCCTGGCGCAt                                                                                                                                  >  2:379659‑M1/21‑42 (MQ=255)                                                                                                                            cagcgaccctgtactcatgtGCCAGGCCAACGCCTGGCGCAt                                                                                                                                  <  1:379659‑M1/22‑1 (MQ=255)                                                                                                                             gggCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCcgc                     <  1:793996/150‑1 (MQ=255)                                                                                                                             agcgaccctgtactcatgcGCCAGGCGTTGGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCcgc                     >  1:95671‑M1/20‑150 (MQ=255)                                                                                                                                           aTACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTc                                            <  1:780815/113‑1 (MQ=255)                                                                                                                                           aTACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTc                                            >  2:780815/1‑113 (MQ=255)                                                                                                                                                GCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCCGCGGCGGcggccgagatggtg  <  1:410499‑M1/150‑6 (MQ=255)                                                                                                                                                |                                                                                                                                                      CGTTTGGTAATCCTTGGCCAGCAGCCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCCGCGGCGGCGGCCGAGACGTTG  >  NC_002947/3933332‑3933624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.