New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3933475 =	19 (0.640)	5 (0.180)	4/232	NT	23.3%	coding (46/1710 nt)	PP_3466	ABC transporter permease/ATP‑binding protein
	?	NC_002947	3933493 =	15 (0.540)					coding (28/1710 nt)	PP_3466	ABC transporter permease/ATP‑binding protein

GGCCAGCAGCCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCCGCGGCGGCGGCCGAGACGTTGCCCTGATGGCG  >  NC_002947/3933347‑3933635                                                                                                                                                   |                                                                                                                                               gtctcggccgccgccgcggcactgggtatcagccgggcgacgctgtaccgcaagctcaagcagttgcgcggctgacgtgggcggcctgttcgcaaggctggtggattccagcgaccctgtactcatgcGCCAGGCCAACGCCTGGCGCAt                                                                                                                                             >  2:755570‑M1/129‑150 (MQ=255) ggCCAGCAGCCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCAt                                                                                                                                             <  1:189121/150‑1 (MQ=255)         gcCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAg                                                                                                                                     <  1:758208/150‑1 (MQ=255)           cccTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAggg                                                                                                                                   <  1:169127/150‑1 (MQ=255)                gcggcactgggtatcagccgggcgacgctgtaccgcaagctcaagcagttgcgcggctgacgtgggcggcctgttcgcaaggctggtggattccagcgaccctgtactcatgcgccaggccaacgcctggcGCATGAGTACAGGGTCGCt                                                                                                                              >  1:95671‑M2/132‑150 (MQ=255)                    cactgggtatcagccgggcgacgctgtaccgcaagctcaagcagttgcgcggctgacgtgggcggcctgttcgcaaggctggtggattccagcgaccctgtactcatgcgccaggccaacgcctggcGCATGAGTACAGGGTCGCTGGaa                                                                                                                          <  2:95671‑M2/23‑1 (MQ=255)                     tCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAAt                                                                                                                         >  1:702272/1‑150 (MQ=255)                                    gccagGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGa                                                                                                          >  2:55801/1‑150 (MQ=255)                                                ccagcgccagcAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCATGCCAACGCCTGGCGCATGAGTACAg                                                                                                                                     <  1:136220/111‑1 (MQ=255)                                                ccagcgccagcAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCATGCCAACGCCTGGCGCATGAGTACAg                                                                                                                                     >  2:136220/1‑111 (MQ=255)                                                 cagcgccagcAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACTCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAACCCACCAGCCTTGCGAACACGACGCCCAc                                                                                             >  1:213031/1‑150 (MQ=255)                                                         gcagcGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGccc                                                                                     >  2:331832/1‑149 (MQ=255)                                                                             aaGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAACCCATAAAGCTATACCAACCTCCCGCGCATGAGTACTGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCg                                                                 <  1:55801/150‑1 (MQ=255)                                                                                         aGGCCGATGGCACGCCGATGGGGGCGCACGAACCAATCCCAGCAGGTCATCTCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGc                                                     <  1:178151/150‑1 (MQ=255)                                                                                         aGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGc                                                     <  2:702272/150‑1 (MQ=255)                                                                                            ccGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCg                                                  <  2:613381/150‑1 (MQ=255)                                                                                                          ttccagcgaccctgtactcatgcGCCAGGCGTTGGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTg                                    <  2:95671‑M1/127‑1 (MQ=255)                                                                                                             cagcgaccctgtactcatgtGCCAGGCCAACGCCTGGCGCAt                                                                                                                                             <  1:379659‑M1/22‑1 (MQ=255)                                                                                                             cagcgaccctgtactcatgtGCCAGGCCAACGCCTGGCGCAt                                                                                                                                             >  2:379659‑M1/21‑42 (MQ=255)                                                                                                              gggCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCcgc                                <  1:793996/150‑1 (MQ=255)                                                                                                              agcgaccctgtactcatgcGCCAGGCGTTGGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCcgc                                >  1:95671‑M1/20‑150 (MQ=255)                                                                                                                            aTACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTc                                                       <  1:780815/113‑1 (MQ=255)                                                                                                                            aTACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTc                                                       >  2:780815/1‑113 (MQ=255)                                                                                                                             atgcgccaggcgttggcctggcGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCCGCGGCGGCGGCCGAGAc                 >  2:755570‑M2/23‑150 (MQ=255)                                                                                                                             atgcgccaggcgttggcctggcACATGAGTACAGGGTCGCTg                                                                                                                             >  2:379659‑M2/23‑42 (MQ=255)                                                                                                                             atgcgccaggcgttggcctggcACATGAGTACAGGGTCGCTg                                                                                                                             <  1:379659‑M2/20‑1 (MQ=255)                                                                                                                                 GCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCCGCGGCGGcggccgagatggtg             <  1:410499‑M1/150‑6 (MQ=255)                                                                                                                                     GGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCCGCGGCGGCGGCCGAGACGTTGCCCt         >  2:190416‑M1/1‑150 (MQ=255)                                                                                                                                            gcctggcGCATGAGTACAGGGTCGCTAGATTCGACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCCGCGGCGGCGGCCGAGACGTTGCCCTGATGgcg  >  1:744080‑M2/8‑150 (MQ=255)                                                                                                                                                ggcGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCCGCGGCGGCGGCCGAGACGTTGCCCTGAt      >  2:425362‑M2/4‑142 (MQ=255)                                                                                                                                                ggcGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCCGCGGCGGCGGCCGAGACGTTGCCCTGAt      <  1:425362‑M2/139‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               GGCCAGCAGCCCCTCATCGATCAGGGTCTTGACCAGCCAGGGTTGCGCCAGCGCCAGCAGCGATGCACCCAGCGACAAGCTGAGCAACAGGCCGATGGCACGCCGATGGGGGCGCACGAAACCATACAGCCAGGCCAACGCCTGGCGCATGAGTACAGGGTCGCTGGAATCCACCAGCCTTGCGAACAGGCCGCCCACGTCAGCCGCGCAACTGCTTGAGCTTGCGGTACAGCGTCGCCCGGCTGATACCCAGTGCCGCGGCGGCGGCCGAGACGTTGCCCTGATGGCG  >  NC_002947/3933347‑3933635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.