New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4471262 | 32 (1.080) | 3 (0.110) | 3/236 | NT | 8.5% | intergenic (‑29/‑865) | PP_3961/PP_3962 | transporter/hypothetical protein |
? | NC_002947 | = 4471274 | 34 (1.200) | intergenic (‑41/‑853) | PP_3961/PP_3962 | transporter/hypothetical protein |
GAGACAACATGGTGATGATCCCGATACCGGTCATCGGCAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTCGTTCGCC > NC_002947/4471113‑4471409 | gagaCAACATGGTGATGATCCCGATACCGGTCATCGGCAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTG > 1:704832‑M1/1‑150 (MQ=255) aacaTGGTGATGATCCCGATACCGGTCATCGGCAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAg > 2:615794/1‑150 (MQ=255) gatCCCGATACCGGTCATCGGCAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTcaag < 1:263818‑M2/150‑5 (MQ=255) ccGGTCATCGGCAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACa < 2:353923/150‑1 (MQ=255) cGGTCATCGGCAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACAt > 2:557019/1‑150 (MQ=255) cAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTa < 1:273801/150‑1 (MQ=255) aaCGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATTCAGTTCGt > 2:679746/1‑148 (MQ=255) aaCGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATTCAGTTCGt < 1:679746/148‑1 (MQ=255) ggCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGAGC‑GTGACTGCCcaagggcctttcgataaggagagtcgagcgtgttcag > 1:768797‑M2/1‑113 (MQ=255) cagGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTtattat > 2:92335/1‑150 (MQ=255) ggccggccAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCTAGATTCTTTAAAGGCCGTT‑GGCAGGCAC‑GTTCAAGGAAACATACATCCAGCTCGCATGATTAAAACCTTATTATCa > 1:413218/1‑150 (MQ=255) aaaGGCGAAGCCCTTGGCGCCTTTTGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAGAACCTTATTATCATACGAAc < 2:346917/149‑1 (MQ=255) gCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGaa > 1:774655/1‑150 (MQ=255) cGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAAt < 2:704832/150‑1 (MQ=255) cGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAAt < 2:774655/150‑1 (MQ=255) ccTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAAt > 1:387535/1‑150 (MQ=255) gcCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGc > 2:72779/1‑97 (MQ=255) gcCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGc < 1:72779/97‑1 (MQ=255) gcCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGAc > 1:518403/1‑150 (MQ=255) tttGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGAGC‑GTGACTGCCcaagggcctttcgataa > 1:497719‑M2/1‑77 (MQ=255) tttGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGAGC‑GTGACTGCCcaagggcctttcgataa < 2:497719‑M2/94‑18 (MQ=255) gCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTggg > 1:639961/1‑63 (MQ=255) gCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTggg < 2:639961/63‑1 (MQ=255) tGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACggg < 2:454099/143‑1 (MQ=255) tGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCGCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACggg > 1:454099/1‑143 (MQ=255) aacaacTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑Gc < 2:596641/66‑1 (MQ=255) aacaacTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑Gc > 1:596641/1‑66 (MQ=255) caacTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTAt > 2:420205/1‑150 (MQ=255) cTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCa < 1:557019/150‑1 (MQ=255) tCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTgg < 2:512799/50‑1 (MQ=255) tCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTgg > 1:512799/1‑50 (MQ=255) tCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAg < 1:615794/150‑1 (MQ=255) gcgGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAgcc < 2:263818/150‑1 (MQ=255) ggtaCTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTg > 1:704688/1‑150 (MQ=255) cTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGggcagtcacgctcaagggcctttcgataaggagagtcgagcgtgttcagtacctaccgcgagttgttccaggccaaaggcgccaagggcttcgccttggccggcctgctggcc > 1:768797‑M1/1‑37 (MQ=255) cTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCt < 2:704688/150‑1 (MQ=255) t‑cCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTc > 2:575792/1‑150 (MQ=255) ttATCGAAAGGCCCTTGggcagtcacgctcaagggcctttcgataaggagagtcgagcgtgttcagtacctaccgcgagttgttccaggccaaa < 2:497719‑M1/94‑78 (MQ=255) ttATCGAAAGGCCCTTGggcagtcacgctcaagggcctttcgataaggagagtcgagcgtgttcagtacctaccgcgagttgttccaggccaaa > 1:497719‑M1/1‑17 (MQ=255) ttATCGAAAGGCCCTTGGGGAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAAATGAATGTAAATACTCGACGGGGGACGTGCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTACCg > 2:379628/1‑150 (MQ=255) ttATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCg > 1:353540/1‑150 (MQ=255) tATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGa < 1:92335/150‑1 (MQ=255) aTCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAAc < 2:712504/104‑1 (MQ=255) aTCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAAc > 1:712504/1‑104 (MQ=255) aaGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTc > 1:781448/1‑150 (MQ=255) ccTTGGGCAGTCAC‑GCTCAAGGCAAAGTACATGCTGCGCGTGTGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTCGTTCg > 1:416411/1‑150 (MQ=255) ccTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTCGTTCg > 2:542392/1‑150 (MQ=255) cTTGagcgtgactgcccaagggcctttcgataaggagagtcgagcgtgttcagtacctaccgcgagttgttccaggccaaaggcgccaagggcttcgccttggccggcctgctggcccggctgccgttgccgatgaccggtatcgggatc < 1:263818‑M1/150‑147 (MQ=255) ttGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTCGTTCGcc < 2:387535/150‑1 (MQ=255) ttGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTCGTTCGcc < 2:353540/150‑1 (MQ=255) | GAGACAACATGGTGATGATCCCGATACCGGTCATCGGCAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTCGTTCGCC > NC_002947/4471113‑4471409 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |