New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4471262	32 (1.080)	3 (0.110)	3/236	NT	8.5%	intergenic (‑29/‑865)	PP_3961/PP_3962	transporter/hypothetical protein
	?	NC_002947	= 4471274	34 (1.200)					intergenic (‑41/‑853)	PP_3961/PP_3962	transporter/hypothetical protein

GATCCCGATACCGGTCATCGGCAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTCGTTCGCC  >  NC_002947/4471129‑4471409                                                                                                                                                    |                                                                                                                                        gatCCCGATACCGGTCATCGGCAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTcaag                                                                                                                                     <  1:263818‑M2/150‑5 (MQ=255)           ccGGTCATCGGCAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACa                                                                                                                           <  2:353923/150‑1 (MQ=255)            cGGTCATCGGCAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACAt                                                                                                                          >  2:557019/1‑150 (MQ=255)                      cAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTa                                                                                                                <  1:273801/150‑1 (MQ=255)                       aaCGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATTCAGTTCGt                                                                                                                 >  2:679746/1‑148 (MQ=255)                       aaCGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATTCAGTTCGt                                                                                                                 <  1:679746/148‑1 (MQ=255)                                  ggCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGAGC‑GTGACTGCCcaagggcctttcgataaggagagtcgagcgtgttcag                                                                                                    >  1:768797‑M2/1‑113 (MQ=255)                                        cagGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTtattat                                                                                              >  2:92335/1‑150 (MQ=255)                                          ggccggccAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCTAGATTCTTTAAAGGCCGTT‑GGCAGGCAC‑GTTCAAGGAAACATACATCCAGCTCGCATGATTAAAACCTTATTATCa                                                                                            >  1:413218/1‑150 (MQ=255)                                                 aaaGGCGAAGCCCTTGGCGCCTTTTGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAGAACCTTATTATCATACGAAc                                                                                     <  2:346917/149‑1 (MQ=255)                                                     gCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGaa                                                                                 >  1:774655/1‑150 (MQ=255)                                                      cGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAAt                                                                                <  2:704832/150‑1 (MQ=255)                                                      cGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAAt                                                                                <  2:774655/150‑1 (MQ=255)                                                            ccTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAAt                                                                          >  1:387535/1‑150 (MQ=255)                                                                   gcCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGc                                                                                                                        <  1:72779/97‑1 (MQ=255)                                                                   gcCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGc                                                                                                                        >  2:72779/1‑97 (MQ=255)                                                                   gcCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGAc                                                                   >  1:518403/1‑150 (MQ=255)                                                                      tttGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGAGC‑GTGACTGCCcaagggcctttcgataa                                                                                                                        >  1:497719‑M2/1‑77 (MQ=255)                                                                      tttGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGAGC‑GTGACTGCCcaagggcctttcgataa                                                                                                                        <  2:497719‑M2/94‑18 (MQ=255)                                                                             tGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACggg                                                                <  2:454099/143‑1 (MQ=255)                                                                             tGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCGCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACggg                                                                >  1:454099/1‑143 (MQ=255)                                                                                  caacTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTAt                                                    >  2:420205/1‑150 (MQ=255)                                                                                     cTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCa                                                 <  1:557019/150‑1 (MQ=255)                                                                                      tCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAg                                                <  1:615794/150‑1 (MQ=255)                                                                                        gcgGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAgcc                                              <  2:263818/150‑1 (MQ=255)                                                                                              ggtaCTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTg                                        >  1:704688/1‑150 (MQ=255)                                                                                                           cTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCt                           <  2:704688/150‑1 (MQ=255)                                                                                                                   t‑cCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTc                   >  2:575792/1‑150 (MQ=255)                                                                                                                       ttATCGAAAGGCCCTTGGGGAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAAATGAATGTAAATACTCGACGGGGGACGTGCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTACCg                >  2:379628/1‑150 (MQ=255)                                                                                                                       ttATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCg                >  1:353540/1‑150 (MQ=255)                                                                                                                        tATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGa               <  1:92335/150‑1 (MQ=255)                                                                                                                         aTCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAAc                                                            <  2:712504/104‑1 (MQ=255)                                                                                                                         aTCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAAc                                                            >  1:712504/1‑104 (MQ=255)                                                                                                                              aaGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTc         >  1:781448/1‑150 (MQ=255)                                                                                                                                   ccTTGGGCAGTCAC‑GCTCAAGGCAAAGTACATGCTGCGCGTGTGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTCGTTCg    >  1:416411/1‑150 (MQ=255)                                                                                                                                   ccTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTCGTTCg    >  2:542392/1‑150 (MQ=255)                                                                                                                                     ttGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTCGTTCGcc  <  2:387535/150‑1 (MQ=255)                                                                                                                                     ttGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTCGTTCGcc  <  2:353540/150‑1 (MQ=255)                                                                                                                                               aC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATg                                                                               >  1:742588/1‑63 (MQ=255)                                                                                                                                               aC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATg                                                                               <  2:742588/63‑1 (MQ=255)                                                                                                                                               aC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCGCTCGTTCGcc  >  2:501679/1‑140 (MQ=255)                                                                                                                                               aC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCGCTCGTTCGcc  <  1:501679/140‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                        GATCCCGATACCGGTCATCGGCAACGGCAGCCGGGCCAGCAGGCCGGCCAAGGCGAAGCCCTTGGCGCCTTTGGCCTGGAACAACTCGCGGTAGGTACTGAACACGCTCGACTCT‑CCTTATCGAAAGGCCCTTGGGCAGTCAC‑GCTCAAGGCAAAATACATGCAGCTCGTATGATTAAAACCTTATTATCATACGAACTGAATGTAAATACTCGACGGGGAACGTCCTTATTCAGCCGCCCTGCCCCGTGACGCCTTGCGTGTCCCGAGCACTCGTTCGCC  >  NC_002947/4471129‑4471409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.