New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4672421	43 (1.460)	3 (0.110)	3/232	NT	6.9%	coding (34/363 nt)	PP_4134	membrane protein
	?	NC_002947	= 4672447	41 (1.470)					coding (8/363 nt) coding (348/348 nt)	PP_4134 PP_4135	membrane protein hypothetical protein

TAGCAGCAGGAGTTTCTTGGCCAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCATGATCATGACCG  >  NC_002947/4672278‑4672570                                                                                                                                                |                                                                                                                                                      tAGCAGCAGGAGTTTCTTGGCCAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAg                                                                                                                                                 <  1:382785/150‑1 (MQ=255)      gcagGAGTTTCTTGGCCAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGt                                                                                                                                            <  2:492857/150‑1 (MQ=255)            gTTTCTTGGCCAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCaaaaa                                                                                                                                      >  1:325695/1‑150 (MQ=255)             tttCTTGGCCAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAAc                                                                                                                                     <  1:436887/150‑1 (MQ=255)              ttCTTGGCCAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACt                                                                                                                                    <  2:737087/150‑1 (MQ=255)               tCTTGGCCAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTg                                                                                                                                   >  2:482639/1‑150 (MQ=255)                cTTGGCCAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGa                                                                                                                                  <  2:749136/150‑1 (MQ=255)                 ttGGCCAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCACAGCCTGGGCCAGGTTGTCAAAAACTGAt                                                                                                                                 >  1:181/1‑150 (MQ=255)                      cAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTc                                                                                                                            >  1:482639‑M2/1‑149 (MQ=255)                       aGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTca                                                                                                                           <  1:759150‑M2/150‑3 (MQ=255)                         tgtCAGGCGCCTGGCCTCACTGGTGATCAATAGAGCGCGTCCCGCGCTCACCAACAGTTCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACGCCCAGGAACGTCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTcagg                                                                                                                         >  2:103704‑M2/1‑146 (MQ=255)                            cAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTcaggcat                                                                                                                      >  2:394173‑M2/1‑143 (MQ=255)                               gcgcCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTAACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGagctatcagtttttgacaacctggcccaggcattg                                                                                                                    >  1:217615‑M1/1‑114 (MQ=255)                               gcgcCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTAACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGagctatcagtttttgacaacctggcccaggcattg                                                                                                                    <  2:217615‑M1/149‑36 (MQ=255)                                 gcCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGagctatcagtttttgacaacctggcccaggcattggtg                                                                                                                 <  1:435733‑M1/150‑39 (MQ=255)                                      gCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGccc                                                                                                            >  1:783730/1‑150 (MQ=255)                                             tgcggATCAATATATCGCGTTCCGCGCTCACCAACAGTACTCCCATCACCGCGGCGAACAGGACAGCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCcgcgc                                                                                                     <  2:325695/146‑1 (MQ=255)                                               gTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCgg                                                                                                   >  2:558895/1‑150 (MQ=255)                                                  aTCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAAc                                                                                                >  1:424182/1‑150 (MQ=255)                                                     aaTCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCaaaaa                                                                                                                                      <  2:227211/109‑1 (MQ=255)                                                     aaTCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCaaaaa                                                                                                                                      >  1:227211/1‑109 (MQ=255)                                                      atcgatcgCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGAGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCACGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGc                                                                                            >  1:763322/1‑150 (MQ=255)                                                              cgTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGc                                                                                    <  1:558895/150‑1 (MQ=255)                                                                     cgcTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGaa                                                                             <  2:306773/150‑1 (MQ=255)                                                                     cgcTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGaa                                                                             <  2:763322/150‑1 (MQ=255)                                                                           ccAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAgg                                                                       >  2:766792/1‑150 (MQ=255)                                                                            cAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAAc                                                                            >  1:632898/1‑144 (MQ=255)                                                                            cAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAAc                                                                            <  2:632898/144‑1 (MQ=255)                                                                            cAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGc                                                                      <  2:424182/150‑1 (MQ=255)                                                                              aCAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCta                                                                    >  1:156213/1‑150 (MQ=255)                                                                                  tGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACa                                                                >  2:745351/1‑150 (MQ=255)                                                                                     tCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGa                                                             >  1:378936/1‑150 (MQ=255)                                                                                       ccaccaGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACAt                                                               <  2:341167/146‑1 (MQ=255)                                                                                       ccaccaGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCATGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACAt                                                               >  1:341167/1‑146 (MQ=255)                                                                                             gcgcGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGa                                                                                                                                  <  1:227463/73‑1 (MQ=255)                                                                                             gcgcGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGa                                                                                                                                  >  2:227463/1‑73 (MQ=255)                                                                                                    gAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATATTGTGGGCCTGCACGAACCCGGCGTGGTGTACAGGCAGACAGGCGGTTGAACCCAGGCTATACAAGACCTCCGCTTGGACaa                                              >  1:258300/1‑150 (MQ=255)                                                                                                           aCATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGAt                                       <  2:362030/150‑1 (MQ=255)                                                                                                           aCATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGAt                                       <  2:378936/150‑1 (MQ=255)                                                                                                            cATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGa                                                                                                  >  2:35347/1‑90 (MQ=255)                                                                                                            cATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGa                                                                                                  <  1:35347/90‑1 (MQ=255)                                                                                                             aTCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGt                                     >  1:261781/1‑150 (MQ=255)                                                                                                                  cATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGcac                                <  2:759150/150‑1 (MQ=255)                                                                                                                   aTCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGcaca                               >  1:391650/1‑150 (MQ=255)                                                                                                                       acacCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCcgcgc                                                                                                     >  2:594824/1‑76 (MQ=255)                                                                                                                       acacCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCcgcgc                                                                                                     <  1:594824/76‑1 (MQ=255)                                                                                                                          cccAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCaa                        <  1:766792/150‑1 (MQ=255)                                                                                                                                     caccaATGCCTGGGCCAGGTTGTCAAAACCTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCAt             <  1:239780/150‑1 (MQ=255)                                                                                                                                     caccaATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTcaggcattggtggcgttcctgggtgtggatggcgatgtcctgttcgccgcgctgctgggagcactgttggtgagcgcggcacgcgatcgattgatcaccagtgaggccaggc             <  1:435733‑M2/150‑113 (MQ=255)                                                                                                                                     caccaATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCAt             <  1:745351/150‑1 (MQ=255)                                                                                                                                       ccaATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAAGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCATGa           <  2:783730/150‑1 (MQ=255)                                                                                                                                        caATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTcaggcattggtggcgttcctgggtgtggatggcgatgtcctgttcgccgcgctgctgggagcactgttggttagcgcggcacgcgatcgattgatcaccagtgaggccaggcgc           <  2:217615‑M2/149‑115 (MQ=255)                                                                                                                                        caATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTcaggcattggtggcgttcctgggtgtggatggcgatgtcctgttcgccgcgctgctgggagcactgttggttagcgcggcacgcgatcgattgatcaccagtgaggccaggcgc           >  1:217615‑M2/1‑35 (MQ=255)                                                                                                                                          aTGCCTGagctatcagtttttgacaacctggcccaggcattggtggcgttcctgggtgtggatggcgatgtcctgttcgccgcgctgctgggagcactgttggtgagcgcggcacgcgatcgattgatcaccagtgaggccaggcgcctg        >  2:394173‑M1/1‑7 (MQ=255)                                                                                                                                             ccTGagctatcagtttttgacaacctggcccaggcattggtgacgttcctgggcgtggatggcgatgtcctgttcgccgcgctgctgggagaactgttggtgagcgcgggacgcgctctattgatcaccagtgaggccaggcgcctgaca     >  2:103704‑M1/1‑4 (MQ=255)                                                                                                                                               tGagctatcagtttttgacaacctggcccaggcattggtggcgttcctgggtgtggatggcgatgtcctgttcgccgcgctgctgggagcactgttggtgagcgcggcacgcgatcgattgatcaccagtgaggccaggcgcctgacact   <  1:759150‑M1/150‑149 (MQ=255)                                                                                                                                                gagctatcagtttttgacaacctggcccaggcattggtggcgttcctgggtgtggatggcgatgtcctgttcgccgcgctgctgggagcactgttggtgagcgcggcacgcgatcgattgatcaccagtgaggccaggcgcctgacactg  >  1:482639‑M1/1‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                      TAGCAGCAGGAGTTTCTTGGCCAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCATGATCATGACCG  >  NC_002947/4672278‑4672570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.