New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4672421	43 (1.460)	3 (0.110)	3/232	NT	6.9%	coding (34/363 nt)	PP_4134	membrane protein
	?	NC_002947	= 4672447	41 (1.470)					coding (8/363 nt) coding (348/348 nt)	PP_4134 PP_4135	membrane protein hypothetical protein

CAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCATGATCATGACCGGCCACATCCTCGAGGCGCTTG  >  NC_002947/4672299‑4672591                                                                                                                                                     |                                                                                                                                                 cAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTc                                                                                                                                                 >  1:482639‑M2/1‑149 (MQ=255)  aGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTca                                                                                                                                                <  1:759150‑M2/150‑3 (MQ=255)    tgtCAGGCGCCTGGCCTCACTGGTGATCAATAGAGCGCGTCCCGCGCTCACCAACAGTTCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACGCCCAGGAACGTCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTcagg                                                                                                                                              >  2:103704‑M2/1‑146 (MQ=255)       cAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTcaggcat                                                                                                                                           >  2:394173‑M2/1‑143 (MQ=255)                 gCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGccc                                                                                                                                 >  1:783730/1‑150 (MQ=255)                        tgcggATCAATATATCGCGTTCCGCGCTCACCAACAGTACTCCCATCACCGCGGCGAACAGGACAGCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCcgcgc                                                                                                                          <  2:325695/146‑1 (MQ=255)                          gTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCgg                                                                                                                        >  2:558895/1‑150 (MQ=255)                             aTCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAAc                                                                                                                     >  1:424182/1‑150 (MQ=255)                                 atcgatcgCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGAGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCACGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGc                                                                                                                 >  1:763322/1‑150 (MQ=255)                                         cgTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGc                                                                                                         <  1:558895/150‑1 (MQ=255)                                                cgcTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGaa                                                                                                  <  2:306773/150‑1 (MQ=255)                                                cgcTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGaa                                                                                                  <  2:763322/150‑1 (MQ=255)                                                      ccAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAgg                                                                                            >  2:766792/1‑150 (MQ=255)                                                       cAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAAc                                                                                                 >  1:632898/1‑144 (MQ=255)                                                       cAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAAc                                                                                                 <  2:632898/144‑1 (MQ=255)                                                       cAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGc                                                                                           <  2:424182/150‑1 (MQ=255)                                                         aCAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCta                                                                                         >  1:156213/1‑150 (MQ=255)                                                             tGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACa                                                                                     >  2:745351/1‑150 (MQ=255)                                                                tCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGa                                                                                  >  1:378936/1‑150 (MQ=255)                                                                  ccaccaGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACAt                                                                                    <  2:341167/146‑1 (MQ=255)                                                                  ccaccaGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCATGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACAt                                                                                    >  1:341167/1‑146 (MQ=255)                                                                               gAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATATTGTGGGCCTGCACGAACCCGGCGTGGTGTACAGGCAGACAGGCGGTTGAACCCAGGCTATACAAGACCTCCGCTTGGACaa                                                                   >  1:258300/1‑150 (MQ=255)                                                                                      aCATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGAt                                                            <  2:362030/150‑1 (MQ=255)                                                                                      aCATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGAt                                                            <  2:378936/150‑1 (MQ=255)                                                                                       cATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGa                                                                                                                       <  1:35347/90‑1 (MQ=255)                                                                                       cATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGa                                                                                                                       >  2:35347/1‑90 (MQ=255)                                                                                        aTCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGt                                                          >  1:261781/1‑150 (MQ=255)                                                                                             cATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGcac                                                     <  2:759150/150‑1 (MQ=255)                                                                                              aTCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGcaca                                                    >  1:391650/1‑150 (MQ=255)                                                                                                  acacCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCcgcgc                                                                                                                          >  2:594824/1‑76 (MQ=255)                                                                                                  acacCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCcgcgc                                                                                                                          <  1:594824/76‑1 (MQ=255)                                                                                                     cccAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCaa                                             <  1:766792/150‑1 (MQ=255)                                                                                                                caccaATGCCTGGGCCAGGTTGTCAAAACCTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCAt                                  <  1:239780/150‑1 (MQ=255)                                                                                                                caccaATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTcaggcattggtggcgttcctgggtgtggatggcgatgtcctgttcgccgcgctgctgggagcactgttggtgagcgcggcacgcgatcgattgatcaccagtgaggccaggc                                  <  1:435733‑M2/150‑113 (MQ=255)                                                                                                                caccaATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCAt                                  <  1:745351/150‑1 (MQ=255)                                                                                                                  ccaATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAAGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCATGa                                <  2:783730/150‑1 (MQ=255)                                                                                                                   caATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTcaggcattggtggcgttcctgggtgtggatggcgatgtcctgttcgccgcgctgctgggagcactgttggttagcgcggcacgcgatcgattgatcaccagtgaggccaggcgc                                <  2:217615‑M2/149‑115 (MQ=255)                                                                                                                   caATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTcaggcattggtggcgttcctgggtgtggatggcgatgtcctgttcgccgcgctgctgggagcactgttggttagcgcggcacgcgatcgattgatcaccagtgaggccaggcgc                                >  1:217615‑M2/1‑35 (MQ=255)                                                                                                                            ggCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAg                                                        <  2:721793/116‑1 (MQ=255)                                                                                                                            ggCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAg                                                        >  1:721793/1‑116 (MQ=255)                                                                                                                             tccAGGTTTTCAAAAACTGATAGCTCAAGCAGGCATTTGCCCTCCGCGCGGAACATGCACACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACCGATGTAGCACACCCGCAAGGGCCGCCCATGATCATGACCGGc                     <  2:156213/149‑1 (MQ=255)                                                                                                                             gCCATGGTGTCAAAAACTGATAGCGCAGGCATGCACTTGCCCTTCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACAACCGCAAGGGCCGCCCATGATCATGACCGGc                     <  2:181/150‑1 (MQ=255)                                                                                                                                         aaaaCTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCATGATc                              >  2:526059/1‑129 (MQ=255)                                                                                                                                         aaaaCTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCATGATc                              <  1:526059/129‑1 (MQ=255)                                                                                                                                              tGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACAccc                                                 <  2:212226/105‑1 (MQ=255)                                                                                                                                              tGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACAccc                                                 >  1:212226/1‑105 (MQ=255)                                                                                                                                              tGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCATGATCATGACCGGCCACATCCTCGAGGCGCt    >  1:76478/1‑150 (MQ=255)                                                                                                                                                aTAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCATGATCATGACCGGCCACATCCTCGAGGCGCTTg  <  2:261781/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CAGTGTCAGGCGCCTGGCCTCACTGGTGATCAATCGATCGCGTGCCGCGCTCACCAACAGTGCTCCCAGCAGCGCGGCGAACAGGACATCGCCATCCACACCCAGGAACGCCACCAATGCCTGGGCCAGGTTGTCAAAAACTGATAGCTCAGGCATGCACTTGCCCTCCGCGCGGAACAGGCAGACAGGCGGTTGAACCCAGGCTATACATGACCGCCGCTTCGACAAAACGGATGTAGCACACCCGCAAGGGCCGCCCATGATCATGACCGGCCACATCCTCGAGGCGCTTG  >  NC_002947/4672299‑4672591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.