New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4987256	38 (1.290)	4 (0.140)	4/244	NT	10.4%	coding (169/468 nt)	PP_4396	hypothetical protein
	?	NC_002947	= 4987290	31 (1.060)					coding (203/468 nt)	PP_4396	hypothetical protein

TCGAAGATGACATTGCCCCGATGCAGGAATTGCTCGACCTTCTGCACAAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGGTGATGTGATGCTGCAGCGGCTCGACATGTTGTCGCAACTGATGGACGA  >  NC_002947/4987116‑4987392                                                                                                                                             |                                                                                                                                         tCGAAGATGACATTGCCCCGATGCAGGAATTGCTCGACCTTCTGCACAAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGcgcc                                                                                                                                 >  1:744977/1‑150 (MQ=255)                ccccGATGCAGGAATTGCTCGACCTTCTGCACAAGGAAGCAATCGCCCTGCATGGCCGCAACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCg                                                                                                                  <  2:272284/150‑1 (MQ=255)                       gCAGGAATTGCTCGACCTTCTGCACAAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCATCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCt                                                                                                           <  1:229836/150‑1 (MQ=255)                         aGGAATTGCTCGACCTTCTGCACAAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTgg                                                                                                         >  2:717414/1‑150 (MQ=255)                         aGGAATTGCTCGACCTTCTGCACAAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTgg                                                                                                         >  2:717336/1‑150 (MQ=255)                               tGCTCGACCTTCTGCACAAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGa                                                                                                   <  1:717414/150‑1 (MQ=255)                               tGCTCGACCTTCTGCACAAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGa                                                                                                   <  1:717336/150‑1 (MQ=255)                                gCTCGACCTTCTGCACAAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAg                                                                                                  >  2:29040/1‑150 (MQ=255)                                  tCGACCTTCTGCACAAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTg                                                                                                >  2:531095/1‑150 (MQ=255)                                      ccTTCTGCACAAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGa                                                                                            <  1:307313/150‑1 (MQ=255)                                               caAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGcccaggctgccgagcaattggctgcggcgctggccatgctgctcgagcaagatga                                                                                   <  1:172085‑M1/150‑56 (MQ=255)                                               caAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGcccaggctgccgagaaattggctgcgacgcaagctatgccgcgctagcaagatga                                                                                   >  2:172085‑M1/1‑95 (MQ=255)                                                     aGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCa                                                                             <  1:748728/150‑1 (MQ=255)                                                        aaTCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGAAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGc                                                                          >  1:337930/1‑150 (MQ=255)                                                                    tGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCa                                                              <  1:29040/150‑1 (MQ=255)                                                                       ccGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGa                                                                                                   >  2:702152/1‑110 (MQ=255)                                                                       ccGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGa                                                                                                   <  1:702152/110‑1 (MQ=255)                                                                                gCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATgg                                                  <  1:455345/150‑1 (MQ=255)                                                                                        tgGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCa                                                              >  2:272198/1‑130 (MQ=255)                                                                                        tgGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCa                                                              <  1:272198/130‑1 (MQ=255)                                                                                        tgGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGgtgatgtga                                          >  2:14309/1‑150 (MQ=255)                                                                                          gAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCa                                                              <  2:512704/128‑1 (MQ=255)                                                                                          gAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCa                                                              >  1:512704/1‑128 (MQ=255)                                                                                          gAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGGtgatgtgatg                                        >  2:558858/1‑150 (MQ=255)                                                                                             cAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGcccaggctgccgagcaattggctgcggcgctggccatg                                                                                                    <  1:629719‑M1/87‑39 (MQ=255)                                                                                             cAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGcccaggctgccgagcaattggctgcggcgctggccatg                                                                                                    >  2:629719‑M1/1‑49 (MQ=255)                                                                                             cAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTa                                                                      >  2:467121/1‑117 (MQ=255)                                                                                             cAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTa                                                                      <  1:467121/117‑1 (MQ=255)                                                                                                 tCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGGTGATGTGATGCTGCAGc                                 <  1:672039/150‑1 (MQ=255)                                                                                                  ccTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGGTGATGTGATGCTGCAGCg                                <  2:337930/150‑1 (MQ=255)                                                                                                     ggCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGGTGATGTGATGCTGCAGCGGCt                             >  2:756544/1‑150 (MQ=255)                                                                                                            aaGCAGTCGTTGATCATCTTGATCGAGCAGCATGGCCAGCGCCGCCGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCGGCCCGACCATGTGTTCGGCCTCGAGCACCACACGCACCCCGTGGTGATGTGATGCTGCAGCGGCTCGACAtg                      <  1:14309/150‑1 (MQ=255)                                                                                                                    gTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGGTGATGTGATGCTGCAGCGGCTCGACATGTTGTCGCa              >  2:245957/1‑150 (MQ=255)                                                                                                                    gTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGAGCAGTCACCCCATGGTGATGTGATGCTGCAGCGGCTCGACATGTTGTCGCa              >  1:127546/1‑150 (MQ=255)                                                                                                                     ttGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGGTGATGTGATGCTGCAGCGGCTCGACATGTTGTCGCaa             >  1:420585/1‑150 (MQ=255)                                                                                                                      tGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGGTGATGTGATGCTGCAGCGGCTCGACATGTTGTCGCAAc            <  1:531095/150‑1 (MQ=255)                                                                                                                         tcatcTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGcatgctgctcgagcaagatgatcaacgactgcttgcgcgccaggatttgctccagcagcggcatgtcgcggccatgcagggcgattgcttccttg         <  1:172085‑M2/150‑96 (MQ=255)                                                                                                                         tcatcTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGGTGATGTGATGCTGCAGCGGCTCGACATGTTGTCGCAACTGa         <  1:558858/150‑1 (MQ=255)                                                                                                                         tcatcTTGCTAGCGCGGCATAGCTTGCGTCGCAGCCAATTTCTCGGCAGCCTGGGcatgctgctcgagcaagatgatcaacgactgcttgcgcgccaggatttgctccagcagcggcatgtcgcggccatgcagggcgattgcttccttg         >  2:172085‑M2/1‑55 (MQ=255)                                                                                                                          catcTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGTAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGGTGATGTGATGCTGCAGCGGCTCGACATGTTGTCGCAACTGAt        <  2:744977/150‑1 (MQ=255)                                                                                                                           atcTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGAGCAGTCACCCCATGGTGATGTGATGCTGCAGCGGCTCGACATGTTGTCGCAACTGATg       <  2:127546/150‑1 (MQ=255)                                                                                                                                gCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGGTGATGTGATGCTGCAGCGGCTCGACATGTTGTCGCAACTGATGgacga  >  2:231043/1‑150 (MQ=255)                                                                                                                                      gcagcaTGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCAt                                                    >  2:101468/1‑94 (MQ=255)                                                                                                                                      gcagcaTGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCAt                                                    <  1:101468/94‑1 (MQ=255)                                                                                                                                          caTGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGcatgctgctcgagcaagatgatcaacgactgcttgcgcgccaggatttg                                                       <  1:629719‑M2/87‑50 (MQ=255)                                                                                                                                          caTGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGcatgctgctcgagcaagatgatcaacgactgcttgcgcgccaggatttg                                                       >  2:629719‑M2/1‑38 (MQ=255)                                                                                                                                             |                                                                                                                                         TCGAAGATGACATTGCCCCGATGCAGGAATTGCTCGACCTTCTGCACAAGGAAGCAATCGCCCTGCATGGCCGCGACATGCCGCTGCTGGAGCAAATCCTGGCGCGCAAGCAGTCGTTGATCATCTTGCTCGAGCAGCATGGCCAGCGCCGCAGCCAATTGCTCGGCAGCCTGGGCCTGAGTGCCGACCGCACCGGTGTGCAGGCTGTAGCTGCGCAGTCACCCCATGGTGATGTGATGCTGCAGCGGCTCGACATGTTGTCGCAACTGATGGACGA  >  NC_002947/4987116‑4987392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.