New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5160427 =	33 (1.120)	4 (0.140)	4/230	NT	10.5%	coding (676/1212 nt)	PP_4543	hypothetical protein
	?	NC_002947	5160466 =	37 (1.340)					coding (637/1212 nt)	PP_4543	hypothetical protein

ACTGAAAAATTCGCGCGTCAGGTAGGGGGCACGACGACGCACCGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGC  >  NC_002947/5160284‑5160575                                                                                                                                                 |                                                                                                                                                     tttccggagcgcacatcaacttcaccgacccggcgctggacgcgcagttggcgggcctgcctgggtggatggaacgcctgggctgccagtttcactggcaaaaccgggggtatcgcgacttccaggactttctcgacagcctcaGCTcgc                                                                                                                                                 <  2:105233‑M1/6‑1 (MQ=255)  cTGAAAAATTCGCGCGTCAGGTAGGGGGCACGACGACGCACCGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCgcgc                                                                                                                                               <  2:620944/150‑1 (MQ=255)       aaaTTCGCGCGTCAGGTAGGGGGCACGACGACGCACCGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCtt                                                                                                                                          <  1:287670/150‑1 (MQ=255)        aaTTCGCGCGTCAGGTAGGGGGCACGACGACGCACCGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGCTAACAGCGGAAGTCGATACCCTGCCCCACCAC‑CTGCTCGCGCTCCTTg                                                                                                                                         >  2:686700/1‑150 (MQ=255)                                 gacgacgCACCGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGc                                                                                                                >  2:77394/1‑150 (MQ=255)                                           cGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCGACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGACACACTGGT‑GCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTc                                                                                                      >  1:647094/1‑150 (MQ=255)                                                   tgtTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGt                                                                                              >  2:279767/1‑150 (MQ=255)                                                   tgtTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGt                                                                                              >  1:683538/1‑150 (MQ=255)                                                        gcatagcataGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTgg                                                                                         >  2:712236/1‑150 (MQ=255)                                                        gcatagcataGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTgg                                                                                         >  1:611690/1‑150 (MQ=255)                                                          atagcatagAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGaa                                                                                       >  2:639184/1‑150 (MQ=255)                                                                 agAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGa                                                                                <  1:77394/150‑1 (MQ=255)                                                                         aacgcctgggctgccagtttcactggcaaaaccgggggtatcgcgacttccaggactttctcgacagcctcaGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAgg                                                                                                           <  2:326617‑M1/44‑1 (MQ=255)                                                                         aacgcctgggctgccagtttcactggcaaaaccgggggtatcgcgacttccaggactttctcgacagcctcaGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAgg                                                                                                           >  1:326617‑M1/73‑116 (MQ=255)                                                                              cccACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGtttt                                                                   <  2:611690/150‑1 (MQ=255)                                                                                cACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTgcttgc                                                                                                                            <  1:522127/91‑1 (MQ=255)                                                                                cACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTgcttgc                                                                                                                            >  2:522127/1‑91 (MQ=255)                                                                                cACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGc                                                                 >  1:63159/1‑150 (MQ=255)                                                                                    tgccagtttcactggcaaaaccgggggtatcgcgacttccaggactttctcgacagcctcaGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGa                                                                                                             <  1:371756‑M1/42‑1 (MQ=255)                                                                                    tgccagtttcactggcaaaaccgggggtatcgcgacttccaggactttctcgacagcctcaGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGa                                                                                                             >  2:371756‑M1/62‑103 (MQ=255)                                                                                              cAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCa                                                   >  2:502613/1‑150 (MQ=255)                                                                                                 ttCATCACCGCGGTACCAGCGGAAGTCGATACCCAGACAAGCACC‑CTGCTAAAACTCCCTGCGCATGTGCTTGCACTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGcc                                                >  1:14816/1‑150 (MQ=255)                                                                                                     tcaCCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGGTGGCGCACCTTGCGCATCTGCTTCCGCTTGAGCGGGCTGAGGCTGTCGAGGAAGTCCTGGAAGTGGCGGTAGTCTCGGTTTTGCCAGGGAGACTGGCAGCCCatg                                            >  2:342592/1‑148 (MQ=255)                                                                                                       aCCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCt                                                                                           <  2:663832/101‑1 (MQ=255)                                                                                                       aCCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCt                                                                                           >  1:663832/1‑101 (MQ=255)                                                                                                         cgcgGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGtt                                        <  1:226372/150‑1 (MQ=255)                                                                                                           cgGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTtcc                                      <  2:683538/150‑1 (MQ=255)                                                                                                                 tttcGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCAc                                >  1:229390/4‑150 (MQ=255)                                                                                                                   gCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGCTACCCCCGCCATTACCAGTGAAACTGGCAGCCCAGGCGTTCCATCCAccc                              >  1:607030/1‑150 (MQ=255)                                                                                                                         gTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGa                                                                                >  2:680630/1‑94 (MQ=255)                                                                                                                         gTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGa                                                                                <  1:680630/94‑1 (MQ=255)                                                                                                                         gTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGc                                                                 <  1:173131/109‑1 (MQ=255)                                                                                                                         gTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGc                                                                 >  2:173131/1‑109 (MQ=255)                                                                                                                         gTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCGCCGTGCGCATCTGCCTGCGCCTGAGCGAGTTGAGGATGTCGAGAAAGTGCTGGAAGTCGCTATACCCCCGGTTTTGCCAATCAAACTGGCAGCCCAGGCGTTCCATCCACCcaggcag                        <  1:47823/150‑1 (MQ=255)                                                                                                                                 ccTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCa                >  1:105233/1‑150 (MQ=255)                                                                                                                                        cGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTgcgc         >  2:724028/1‑150 (MQ=255)                                                                                                                                          ccAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTtccatc                                   <  2:162286/122‑1 (MQ=255)                                                                                                                                          ccAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTtccatc                                   >  1:162286/1‑122 (MQ=255)                                                                                                                                           cAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTc      >  2:414410/1‑150 (MQ=255)                                                                                                                                             c‑cTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGtttt                                                                   >  1:193965/1‑87 (MQ=255)                                                                                                                                             c‑cTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGtttt                                                                   <  2:193965/87‑1 (MQ=255)                                                                                                                                             c‑cTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCa    <  1:397895/150‑1 (MQ=255)                                                                                                                                                tGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAgc  <  1:502613/150‑1 (MQ=255)                                                                                                                                                tGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAgc  <  1:279767/150‑1 (MQ=255)                                                                                                                                                tGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAgc  >  2:687217/1‑150 (MQ=255)                                                                                                                                                tGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAgc  <  1:712236/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     ACTGAAAAATTCGCGCGTCAGGTAGGGGGCACGACGACGCACCGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGC  >  NC_002947/5160284‑5160575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.