| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5160427 = | 33 (1.120) | 4 (0.140) | 4/230 | NT | 10.5% | coding (676/1212 nt) | PP_4543 | hypothetical protein |
| ? | NC_002947 | 5160466 = | 37 (1.340) | coding (637/1212 nt) | PP_4543 | hypothetical protein | |||||
CGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAA > NC_002947/5160326‑5160609 | cGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCGACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGACACACTGGT‑GCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTc > 1:647094/1‑150 (MQ=255) tgtTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGt > 2:279767/1‑150 (MQ=255) tgtTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGt > 1:683538/1‑150 (MQ=255) gcatagcataGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTgg > 2:712236/1‑150 (MQ=255) gcatagcataGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTgg > 1:611690/1‑150 (MQ=255) atagcatagAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGaa > 2:639184/1‑150 (MQ=255) agAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGa < 1:77394/150‑1 (MQ=255) aacgcctgggctgccagtttcactggcaaaaccgggggtatcgcgacttccaggactttctcgacagcctcaGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAgg < 2:326617‑M1/44‑1 (MQ=255) aacgcctgggctgccagtttcactggcaaaaccgggggtatcgcgacttccaggactttctcgacagcctcaGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAgg > 1:326617‑M1/73‑116 (MQ=255) cccACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGtttt < 2:611690/150‑1 (MQ=255) cACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGc > 1:63159/1‑150 (MQ=255) tgccagtttcactggcaaaaccgggggtatcgcgacttccaggactttctcgacagcctcaGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGa > 2:371756‑M1/62‑103 (MQ=255) tgccagtttcactggcaaaaccgggggtatcgcgacttccaggactttctcgacagcctcaGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGa < 1:371756‑M1/42‑1 (MQ=255) cAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCa > 2:502613/1‑150 (MQ=255) ttCATCACCGCGGTACCAGCGGAAGTCGATACCCAGACAAGCACC‑CTGCTAAAACTCCCTGCGCATGTGCTTGCACTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGcc > 1:14816/1‑150 (MQ=255) tcaCCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGGTGGCGCACCTTGCGCATCTGCTTCCGCTTGAGCGGGCTGAGGCTGTCGAGGAAGTCCTGGAAGTGGCGGTAGTCTCGGTTTTGCCAGGGAGACTGGCAGCCCatg > 2:342592/1‑148 (MQ=255) aCCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCt < 2:663832/101‑1 (MQ=255) aCCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCt > 1:663832/1‑101 (MQ=255) cgcgGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGtt < 1:226372/150‑1 (MQ=255) cgGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTtcc < 2:683538/150‑1 (MQ=255) tttcGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCAc > 1:229390/4‑150 (MQ=255) gCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGCTACCCCCGCCATTACCAGTGAAACTGGCAGCCCAGGCGTTCCATCCAccc > 1:607030/1‑150 (MQ=255) gTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGa > 2:680630/1‑94 (MQ=255) gTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGa < 1:680630/94‑1 (MQ=255) gTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGc < 1:173131/109‑1 (MQ=255) gTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGc > 2:173131/1‑109 (MQ=255) gTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCGCCGTGCGCATCTGCCTGCGCCTGAGCGAGTTGAGGATGTCGAGAAAGTGCTGGAAGTCGCTATACCCCCGGTTTTGCCAATCAAACTGGCAGCCCAGGCGTTCCATCCACCcaggcag < 1:47823/150‑1 (MQ=255) ccTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCa > 1:105233/1‑150 (MQ=255) cGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTgcgc > 2:724028/1‑150 (MQ=255) ccAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTtccatc < 2:162286/122‑1 (MQ=255) ccAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTtccatc > 1:162286/1‑122 (MQ=255) cAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTc > 2:414410/1‑150 (MQ=255) cctcagctcgcgcaagcgcaagcagatgcgcaaggagcgcgagcTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGtt < 2:326617‑M2/72‑1 (MQ=255) cctcagctcgcgcaagcgcaagcagatgcgcaaggagcgcgagcTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGtt > 1:326617‑M2/45‑116 (MQ=255) c‑cTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGtttt < 2:193965/87‑1 (MQ=255) c‑cTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGtttt > 1:193965/1‑87 (MQ=255) c‑cTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCa < 1:397895/150‑1 (MQ=255) tcagctcgcgcaagcgcaagcagatgcgcaaggagcgcgagcTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCa > 2:371756‑M2/43‑103 (MQ=255) tcagctcgcgcaagcgcaagcagatgcgcaaggagcgcgagcTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCa < 1:371756‑M2/61‑1 (MQ=255) tGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAgc < 1:712236/150‑1 (MQ=255) tGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAgc < 1:279767/150‑1 (MQ=255) tGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAgc > 2:687217/1‑150 (MQ=255) tGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAgc < 1:502613/150‑1 (MQ=255) GCGCTCCTCGCGCATCTGCTTGCGCTTGCGCCAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATCCCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCgg > 1:342592‑M1/1‑150 (MQ=255) GCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCcgggg < 1:368284‑M1/150‑2 (MQ=255) gcgcATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGaa < 2:63159/150‑1 (MQ=255) gcgcATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGaa < 1:414410/150‑1 (MQ=255) gcgagcTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGaaa < 2:105233‑M2/144‑1 (MQ=255) | CGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCAC‑CTGCTCGCGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAA > NC_002947/5160326‑5160609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |