New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5355246 =	36 (1.220)	4 (0.140)	4/240	NT	10.1%	coding (504/918 nt)	truB	tRNA pseudouridine(55) synthase TruB
	?	NC_002947	5355272 =	36 (1.250)					coding (478/918 nt)	truB	tRNA pseudouridine(55) synthase TruB

TCGAGGGTGACCGTCTGTGCCAGCGCAAAGGGCCCTGCCTGGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCT  >  NC_002947/5355100‑5355392                                                                                                                                                   |                                                                                                                                                     tCGAGGGTGACCGTCTGTGCCAGCGCAAAGGGCCCTGCCTGGGTCCTGCGCAGCTCGGCGGCATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCa                                                                                                                                                   >  1:122518/1‑150 (MQ=255) tCGAGGGTGACCGTCTGTGCCAGCGCAAAGGGCCCTGCCTGGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCATCCGCTCGGCCGTGCa                                                                                                                                                   >  2:566869/1‑150 (MQ=255)           ccGTCTGTGCCAGCGCAAAGGGCCCTGCCTGGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCtt                                                                                                                                         >  1:72655/1‑150 (MQ=255)            cGTCTGTGCCAGCGCAAAGGGCCCTGCCTGGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTc                                                                                                                                        <  1:511796/150‑1 (MQ=255)              tCTGTGCCAGCGCAAAGGGCCCTGCCTGGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGc                                                                                                                                      >  2:490500/1‑150 (MQ=255)              tCTGTGCCAGCGCAAAGGGCCCTGCCTGGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGc                                                                                                                                      >  1:296528/1‑150 (MQ=255)                    ccAGCGCAAAGGGCCCTGCCTGGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCgg                                                                                                                                >  2:273409/1‑149 (MQ=255)                      aGCGCAAAGGGCCCTGCCTGGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGc                                                                                                                              >  1:370834/1‑150 (MQ=255)                               ggCCCTGCCTGGGTCCTGCGCAGCTCGGCCACCAACGTCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCCGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAg                                                                                                                     <  2:461354/150‑1 (MQ=255)                                  cctgcctgGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCgg                                                                                                                  >  1:292915/1‑150 (MQ=255)                                   ctgcctgGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGt                                                                                                                 <  1:755858/150‑1 (MQ=255)                                      cctgGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTaa                                                                                                              <  1:490500/150‑1 (MQ=255)                                       ctgGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAAt                                                                                                             <  1:267757/150‑1 (MQ=255)                                        tgGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATa                                                                                                            <  1:343906/150‑1 (MQ=255)                                             ccTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAAc                                                                                                       <  2:72655/150‑1 (MQ=255)                                                  gcAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGc                                                                                                                                      >  1:319294/1‑114 (MQ=255)                                                  gcAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGc                                                                                                                                      <  2:319294/114‑1 (MQ=255)                                                      tcaagcgtgacggccagccgttgtacaagctggcacgtgcaggagaggtagtggagcgcgaggcgcgttctgttactattaaccgcttggagtTGCACGGGTGCCTTCGCACTCGAGCAACTCCaa                                                                                                                      <  2:548362‑M1/33‑1 (MQ=255)                                                      tcaagcgtgacggccagccgttgtacaagctggcacgtgcaggagaggtagtggagcgcgaggcgcgttctgttactattaaccgcttggagtTGCACGGGTGCCTTCGCACTCGAGCAACTCCaa                                                                                                                      >  1:548362‑M1/94‑126 (MQ=255)                                                         ggCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTc                                                                                           <  1:3214/150‑1 (MQ=255)                                                               aTAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTc                                                                                     <  2:203049/150‑1 (MQ=255)                                                                   gCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACt                                                                                 >  1:630916/1‑150 (MQ=255)                                                                   ccagccgttgtacaagctggcacgtgcaggagaggtagtggagcgcgaggcgcgttctgttactattaaccgcttggagtTGCACGGGTGCCTTCGCACTCGAGCaa                                                                                                                            >  1:516043‑M1/81‑107 (MQ=255)                                                                   ccagccgttgtacaagctggcacgtgcaggagaggtagtggagcgcgaggcgcgttctgttactattaaccgcttggagtTGCACGGGTGCCTTCGCACTCGAGCaa                                                                                                                            <  2:516043‑M1/27‑1 (MQ=255)                                                                     cccGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTACGTTCAGCAGAACGCGCCTCGCGCTCCACTAc                                                                               <  1:20431/150‑1 (MQ=255)                                                                     cccGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTAc                                                                               <  2:241378/150‑1 (MQ=255)                                                                                    ttCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACTTGc                                                                >  2:240533/1‑150 (MQ=255)                                                                                    ttCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGc                                                                <  2:122518/150‑1 (MQ=255)                                                                                          gATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑tt                                                        <  2:296528/150‑1 (MQ=255)                                                                                                 tccACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAAc                                                 >  1:212838/1‑150 (MQ=255)                                                                                                     ccaGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCt                                             <  2:788587/150‑1 (MQ=255)                                                                                                        gCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGCCGTTGTACaagctggc                                            <  2:630916/150‑7 (MQ=255)                                                                                                          gTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCg                                        >  2:636474/1‑150 (MQ=255)                                                                                                                        gCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAgcgc                          >  1:267720/1‑150 (MQ=255)                                                                                                                               ctgcATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGt                                                                  <  2:124262/105‑1 (MQ=255)                                                                                                                               ctgcATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGt                                                                  >  1:124262/1‑105 (MQ=255)                                                                                                                                tgcATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACa                  <  1:709790/150‑1 (MQ=255)                                                                                                                                     ccTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGc             <  2:267720/150‑1 (MQ=255)                                                                                                                                      cTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCg            <  2:370834/150‑1 (MQ=255)                                                                                                                                       tACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGt                                                      >  2:169779/1‑107 (MQ=255)                                                                                                                                       tACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGt                                                      <  1:169779/107‑1 (MQ=255)                                                                                                                                             cAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTg     <  1:273409/150‑1 (MQ=255)                                                                                                                                                ccGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCt  <  2:292915/150‑1 (MQ=255)                                                                                                                                                ccGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCt  <  2:776861/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TCGAGGGTGACCGTCTGTGCCAGCGCAAAGGGCCCTGCCTGGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCT  >  NC_002947/5355100‑5355392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.