New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5355246 =	36 (1.220)	4 (0.140)	4/240	NT	10.1%	coding (504/918 nt)	truB	tRNA pseudouridine(55) synthase TruB
	?	NC_002947	5355272 =	36 (1.250)					coding (478/918 nt)	truB	tRNA pseudouridine(55) synthase TruB

GGCCCTGCCTGGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCTGATCGGGCCGCGAAAACGTGGCA  >  NC_002947/5355130‑5355415                                                                                                                                               |                                                                                                                                                  ggCCCTGCCTGGGTCCTGCGCAGCTCGGCCACCAACGTCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCCGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAg                                                                                                                                            <  2:461354/150‑1 (MQ=255)    cctgcctgGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCgg                                                                                                                                         >  1:292915/1‑150 (MQ=255)     ctgcctgGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGt                                                                                                                                        <  1:755858/150‑1 (MQ=255)        cctgGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTaa                                                                                                                                     <  1:490500/150‑1 (MQ=255)         ctgGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAAt                                                                                                                                    <  1:267757/150‑1 (MQ=255)          tgGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATa                                                                                                                                   <  1:343906/150‑1 (MQ=255)               ccTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAAc                                                                                                                              <  2:72655/150‑1 (MQ=255)                        tcaagcgtgacggccagccgttgtacaagctggcacgtgcaggagaggtagtggagcgcgaggcgcgttctgttactattaaccgcttggagtTGCACGGGTGCCTTCGCACTCGAGCAACTCCaa                                                                                                                                             >  1:548362‑M1/94‑126 (MQ=255)                        tcaagcgtgacggccagccgttgtacaagctggcacgtgcaggagaggtagtggagcgcgaggcgcgttctgttactattaaccgcttggagtTGCACGGGTGCCTTCGCACTCGAGCAACTCCaa                                                                                                                                             <  2:548362‑M1/33‑1 (MQ=255)                           ggCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTc                                                                                                                  <  1:3214/150‑1 (MQ=255)                                 aTAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTc                                                                                                            <  2:203049/150‑1 (MQ=255)                                     gCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACt                                                                                                        >  1:630916/1‑150 (MQ=255)                                     ccagccgttgtacaagctggcacgtgcaggagaggtagtggagcgcgaggcgcgttctgttactattaaccgcttggagtTGCACGGGTGCCTTCGCACTCGAGCaa                                                                                                                                                   >  1:516043‑M1/81‑107 (MQ=255)                                     ccagccgttgtacaagctggcacgtgcaggagaggtagtggagcgcgaggcgcgttctgttactattaaccgcttggagtTGCACGGGTGCCTTCGCACTCGAGCaa                                                                                                                                                   <  2:516043‑M1/27‑1 (MQ=255)                                       cccGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTACGTTCAGCAGAACGCGCCTCGCGCTCCACTAc                                                                                                      <  1:20431/150‑1 (MQ=255)                                       cccGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTAc                                                                                                      <  2:241378/150‑1 (MQ=255)                                                      ttCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACTTGc                                                                                       >  2:240533/1‑150 (MQ=255)                                                      ttCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGc                                                                                       <  2:122518/150‑1 (MQ=255)                                                            gATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑tt                                                                               <  2:296528/150‑1 (MQ=255)                                                                   tccACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAAc                                                                        >  1:212838/1‑150 (MQ=255)                                                                       ccaGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCt                                                                    <  2:788587/150‑1 (MQ=255)                                                                          gCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGCCGTTGTACaagctggc                                                                   <  2:630916/150‑7 (MQ=255)                                                                            gTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCg                                                               >  2:636474/1‑150 (MQ=255)                                                                                          gCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAgcgc                                                 >  1:267720/1‑150 (MQ=255)                                                                                                 ctgcATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGt                                                                                         <  2:124262/105‑1 (MQ=255)                                                                                                 ctgcATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGt                                                                                         >  1:124262/1‑105 (MQ=255)                                                                                                  tgcATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACa                                         <  1:709790/150‑1 (MQ=255)                                                                                                       ccTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGc                                    <  2:267720/150‑1 (MQ=255)                                                                                                        cTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCg                                   <  2:370834/150‑1 (MQ=255)                                                                                                         tACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGt                                                                             >  2:169779/1‑107 (MQ=255)                                                                                                         tACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGt                                                                             <  1:169779/107‑1 (MQ=255)                                                                                                              ttggagttgctcgagtgcgaaggcacccgtgcaACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGa                                                     >  1:548362‑M2/34‑126 (MQ=255)                                                                                                              ttggagttgctcgagtgcgaaggcacccgtgcaACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGa                                                     <  2:548362‑M2/93‑1 (MQ=255)                                                                                                               cAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTg                            <  1:273409/150‑1 (MQ=255)                                                                                                                  ccGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCt                         <  2:292915/150‑1 (MQ=255)                                                                                                                  ccGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCt                         <  2:776861/150‑1 (MQ=255)                                                                                                                    ttgctcgagtgcgaaggcacccgtgcaACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTgg                                                                  >  1:516043‑M2/28‑107 (MQ=255)                                                                                                                    ttgctcgagtgcgaaggcacccgtgcaACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTgg                                                                  <  2:516043‑M2/80‑1 (MQ=255)                                                                                                                              gCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCTGATCGGGCcgcg             >  2:682188/1‑150 (MQ=255)                                                                                                                                cTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCTGATCGGGCCGCGaa           >  2:759586/1‑150 (MQ=255)                                                                                                                                 ttCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGACTCGCTTGCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCTGATCGGGCCGCGaaa          >  1:418673/1‑150 (MQ=255)                                                                                                                                      aCTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCAc                                                                                                         >  1:171010/1‑52 (MQ=255)                                                                                                                                      aCTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCAc                                                                                                         <  2:171010/52‑1 (MQ=255)                                                                                                                                      aCTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCTGATCGGGCCGCGAAAACGTg     >  2:463838/1‑150 (MQ=255)                                                                                                                                       cTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACgg                                                                      >  1:409581/1‑84 (MQ=255)                                                                                                                                       cTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACgg                                                                      <  2:409581/84‑1 (MQ=255)                                                                                                                                        tCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCTGATCGGGCCGCGAAAACGTgg    >  2:531651/1‑149 (MQ=255)                                                                                                                                        tCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCTGATCGGGCCGCGAAAACGTgg    <  1:531651/149‑1 (MQ=255)                                                                                                                                         cGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCTGATCGGGCCGCGAAAACGTGgca  >  2:207189/1‑150 (MQ=255)                                                                                                                                               |                                                                                                                                                  GGCCCTGCCTGGGTCCTGCGCAGCTCGGCGACATAGGCCCCGCAACCAAGGGCTTCACCGATATCCTCCACCAGCGTGCGGATATAGGTGCCTTTGCTGCATCCTACGCTCAGCCGTGCACGGGTGCCTTCGCACTCGAGCAACTCCAAGCGGTTAATAGTAACAGAACGCGCCTCGCGCTCCACTACCTCTCCTGCACGTGCCAGC‑‑TTGTACAACGGCTGGCCGTCACGCTTGAGCGCCGAGTACATAGGCGGTATCTGGCTGATCGGGCCGCGAAAACGTGGCA  >  NC_002947/5355130‑5355415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.