New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5378580 =	37 (1.250)	3 (0.100)	3/242	NT	7.0%	coding (117/1674 nt)	recN	DNA repair/recombination protein
	?	NC_002947	5378624 =	43 (1.480)					coding (161/1674 nt)	recN	DNA repair/recombination protein

AATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACG  >  NC_002947/5378431‑5378725                                                                                                                                                      |                                                                                                                                                  aataaCCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTc                                                                                                                                                   <  1:324577/150‑1 (MQ=255) aataaCCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTc                                                                                                                                                   >  1:757362/1‑150 (MQ=255)  ataaCCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCg                                                                                                                                                  >  1:110879/1‑150 (MQ=255)                   ccGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGcc                                                                                                                                 <  2:757362/150‑1 (MQ=255)                    cGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGc                                                                                                                                  >  2:640792/1‑148 (MQ=255)                    cGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGc                                                                                                                                  <  1:640792/148‑1 (MQ=255)                       gAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTgg                                                                                                                             <  2:640701/150‑1 (MQ=255)                       gAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTgg                                                                                                                             <  1:694845/150‑1 (MQ=255)                             aCCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGAcc                                                                                                                       >  1:795176/1‑150 (MQ=255)                                 cATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGc                                                                                                                   <  2:110879/150‑1 (MQ=255)                                    gCTGGTGCACCTGTCCATTCACAACTACTCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGa                                                                                                                >  1:743818/1‑150 (MQ=255)                                         tGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAgcg                                                                                                           >  1:370976/1‑150 (MQ=255)                                              ttcgttgtccaggccgcgctcggccagccaggtgtgcgcttcgggaatgtccaccaggtcgaaggtggccaggatgtctgccttgtcggtgccggggcgcaccaCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCgtg                                                                                                      >  1:79247‑M1/105‑150 (MQ=255)                                                     ttCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGcc                                                                                               >  1:574202/1‑150 (MQ=255)                                                            cTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCAc                                                                                        <  2:370976/150‑1 (MQ=255)                                                            cTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCAc                                                                                        <  1:690779/150‑1 (MQ=255)                                                                gCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGAc                                                                                    >  1:9151/1‑150 (MQ=255)                                                                  cATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACaa                                                                                  >  1:166901/1‑150 (MQ=255)                                                                  cATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTAATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGc                                                                                                                   >  1:37236/1‑117 (MQ=255)                                                                  cATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTAATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGc                                                                                                                   <  2:37236/117‑1 (MQ=255)                                                                  cATCGTCGAGCACCTCGACCTAGAAAGCTCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACaa                                                                                  >  2:71082/1‑150 (MQ=255)                                                                    tcgtcgAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAgg                                                                                <  2:472665/150‑1 (MQ=255)                                                                             acctcgacctcgAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGCCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGCCACCGACAAGGCAGACATcc                                                                       >  2:294159/1‑150 (MQ=255)                                                                               ctcgacctcgaAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTg                                                                     >  1:611182/1‑150 (MQ=255)                                                                               ctcgacctcgaAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTg                                                                     >  2:752609/1‑150 (MQ=255)                                                                               ctcgacctcgaAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTg                                                                     >  1:734622/1‑150 (MQ=255)                                                                                tcgacctcgaAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTgg                                                                    >  1:595329/1‑150 (MQ=255)                                                                                      tcgaAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCt                                                              >  2:694837/1‑150 (MQ=255)                                                                                        gaAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTc                                                            >  2:559559/1‑150 (MQ=255)                                                                                          aaTCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGa                                                          <  1:559559/150‑1 (MQ=255)                                                                                            tCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGAcc                                                        <  2:611182/150‑1 (MQ=255)                                                                                                ccGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGTCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCtggt                                                    <  2:708032/150‑1 (MQ=255)                                                                                                 caccaggtcgaaggtggccaggatgtctgccttgtcggtgccggggcgcaccaCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACa                                                                                                              >  1:583975‑M1/54‑91 (MQ=255)                                                                                                 caccaggtcgaaggtggccaggatgtctgccttgtcggtgccggggcgcaccaCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACa                                                                                                              <  2:583975‑M1/38‑1 (MQ=255)                                                                                                  gTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCtggtgg                                                  <  2:9151/150‑1 (MQ=255)                                                                                                         gTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTcc                                           <  2:166901/150‑1 (MQ=255)                                                                                                             gTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGaa                                       <  2:743818/150‑1 (MQ=255)                                                                                                              tcatcaCTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAg                                      <  2:531019/150‑1 (MQ=255)                                                                                                              tcatcaCTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAg                                      >  1:787482/1‑150 (MQ=255)                                                                                                              tcatcaCTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCACCGGCACATGCCAGCAAGACACCCGGCCCACCATCTACGTGGTGGGCATTcctgcag                                      >  2:406814/1‑145 (MQ=255)                                                                                                                     tGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCacac                               >  2:665681/1‑150 (MQ=255)                                                                                                                              cGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCtggctggc                      >  2:757551/1‑150 (MQ=255)                                                                                                                                 cgcCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGa                   <  2:734622/150‑1 (MQ=255)                                                                                                                                                  tGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGGCATCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACg  <  1:406814/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  AATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGCACCTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACG  >  NC_002947/5378431‑5378725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.