New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5378580 =	37 (1.250)	3 (0.100)	3/242	NT	7.0%	coding (117/1674 nt)	recN	DNA repair/recombination protein
	?	NC_002947	5378624 =	43 (1.480)					coding (161/1674 nt)	recN	DNA repair/recombination protein

CTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCGGGTGATCACCGCCGAAG  >  NC_002947/5378476‑5378764                                                                                                                                                     |                                                                                                                                             ttcgttgtccaggccgcgctcggccagccaggtgtgcgcttcgggaatgtccaccaggtcgaaggtggccaggatgtctgccttgtcggtgccggggcgcaccaCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCgtg                                                                                                                                             >  1:79247‑M1/105‑150 (MQ=255)        ttCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGcc                                                                                                                                      >  1:574202/1‑150 (MQ=255)               cTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCAc                                                                                                                               <  1:690779/150‑1 (MQ=255)               cTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCAc                                                                                                                               <  2:370976/150‑1 (MQ=255)                   gCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGAc                                                                                                                           >  1:9151/1‑150 (MQ=255)                     cATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACaa                                                                                                                         >  1:166901/1‑150 (MQ=255)                     cATCGTCGAGCACCTCGACCTAGAAAGCTCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACaa                                                                                                                         >  2:71082/1‑150 (MQ=255)                       tcgtcgAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAgg                                                                                                                       <  2:472665/150‑1 (MQ=255)                                acctcgacctcgAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGCCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGCCACCGACAAGGCAGACATcc                                                                                                              >  2:294159/1‑150 (MQ=255)                                  ctcgacctcgaAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTg                                                                                                            >  1:611182/1‑150 (MQ=255)                                  ctcgacctcgaAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTg                                                                                                            >  2:752609/1‑150 (MQ=255)                                  ctcgacctcgaAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTg                                                                                                            >  1:734622/1‑150 (MQ=255)                                   tcgacctcgaAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTgg                                                                                                           >  1:595329/1‑150 (MQ=255)                                         tcgaAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCt                                                                                                     >  2:694837/1‑150 (MQ=255)                                           gaAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTc                                                                                                   >  2:559559/1‑150 (MQ=255)                                             aaTCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGa                                                                                                 <  1:559559/150‑1 (MQ=255)                                               tCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGAcc                                                                                               <  2:611182/150‑1 (MQ=255)                                                   ccGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGTCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCtggt                                                                                           <  2:708032/150‑1 (MQ=255)                                                     gTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCtggtgg                                                                                         <  2:9151/150‑1 (MQ=255)                                                            gTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTcc                                                                                  <  2:166901/150‑1 (MQ=255)                                                                gTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGaa                                                                              <  2:743818/150‑1 (MQ=255)                                                                 tcatcaCTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAg                                                                             >  1:787482/1‑150 (MQ=255)                                                                 tcatcaCTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAg                                                                             <  2:531019/150‑1 (MQ=255)                                                                 tcatcaCTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCACCGGCACATGCCAGCAAGACACCCGGCCCACCATCTACGTGGTGGGCATTcctgcag                                                                             >  2:406814/1‑145 (MQ=255)                                                                        tGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCacac                                                                      >  2:665681/1‑150 (MQ=255)                                                                                 cGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCtggctggc                                                             >  2:757551/1‑150 (MQ=255)                                                                                    cgcCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGa                                                          <  2:734622/150‑1 (MQ=255)                                                                                                     tGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGGCATCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACg                                         <  1:406814/150‑1 (MQ=255)                                                                                                       cacgccgctgtcggcacggtcgcccagggcaaggccgagagcgtcgTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGGCCTGGACAACGaa                                       >  1:79247‑M2/47‑150 (MQ=255)                                                                                                               tgtcggcacggtcgcccagggcaaggccgagagcgtcgTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCtggtg                                                                                          >  1:583975‑M2/39‑91 (MQ=255)                                                                                                               tgtcggcacggtcgcccagggcaaggccgagagcgtcgTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCtggtg                                                                                          <  2:583975‑M2/53‑1 (MQ=255)                                                                                                                 tcGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCa                             >  1:200889/1‑150 (MQ=255)                                                                                                                           ccTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCtg                                 >  1:157104/1‑136 (MQ=255)                                                                                                                           ccTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCtg                                 <  2:157104/136‑1 (MQ=255)                                                                                                                           ccTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCg                   >  1:755618/1‑150 (MQ=255)                                                                                                                            cTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCgg                  <  1:369872/150‑1 (MQ=255)                                                                                                                            cTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACAGCGGGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCgg                  <  1:210077/150‑1 (MQ=255)                                                                                                                             tGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCggg                 <  2:595329/150‑1 (MQ=255)                                                                                                                                gCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCGGGTGa              <  2:795176/150‑1 (MQ=255)                                                                                                                                gCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCCCCGTGGCGGATATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCGGGTGa              <  1:694837/150‑1 (MQ=255)                                                                                                                                    ccGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCGGGt                <  1:245425/144‑1 (MQ=255)                                                                                                                                    ccGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCGGGt                >  2:245425/1‑144 (MQ=255)                                                                                                                                    ccGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCGGGTGATCAc          >  1:398556/1‑150 (MQ=255)                                                                                                                                          cGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACAGTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCGGGTGATCACCGCCGa    >  1:577652/1‑150 (MQ=255)                                                                                                                                           gACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCGGGTGATCACCGCCGaa   <  2:574202/150‑1 (MQ=255)                                                                                                                                           gACAGCGGCGTGGTGCCCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTAGGCGTGTTTAACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCGTGCGCCGGGTGATCACCGCCGaa   <  1:294159/150‑1 (MQ=255)                                                                                                                                            aCAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCGGGTGATCACCGCCGAAg  <  2:787482/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             CTGTCCATTCACAACTACGCCATCGTCGAGCACCTCGACCTCGAAATCGCCCGTGGCATGTCCGTCATCACTGGCGAGACCGGCGCCGGCAAATCGATCATGCTCGACGCTCTCGGCCTTGCCCTGGGCGACCGTGCCGACAGCGGCGTGGTGCGCCCCGGCACCGACAAGGCAGACATCCTGGCCACCTTCGACCTGGTGGACATTCCCGAAGCGCACACCTGGCTGGCCGAGCGCGACCTGGACAACGAAGGCCTGTGCATCTTGCGCCGGGTGATCACCGCCGAAG  >  NC_002947/5378476‑5378764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.