New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5782373	38 (1.290)	4 (0.140)	4/238	NT	10.4%	coding (792/3309 nt)	kefA	intermediate mechanosensitive channel protein
	?	NC_002947	= 5782390	32 (1.120)					coding (809/3309 nt)	kefA	intermediate mechanosensitive channel protein

TCGGCAATGCGCGTCACGACCTGATGGTCGAGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAGCCTGACCCAGGCCGACCAGGC  >  NC_002947/5782228‑5782522                                                                                                                                                  |                                                                                                                                                      tCGGCAATGCGCGTCACGACCTGATGGTCGAGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCcggcg                                                                                                                                                   >  1:70353/1‑150 (MQ=255) tCGGCAATGCGCGTCACGACCTGATGGTCGAGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGATCAGAAGGCcggcg                                                                                                                                                   >  2:143418/1‑150 (MQ=255)       aTGCGCGTCACGACCTGATGGTCGAGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGgcagca                                                                                                                                             <  1:169567/150‑1 (MQ=255)         gcgcGTCACGACATGATGGTCGAGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACCCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCagcagc                                                                                                                                           <  1:46970/150‑1 (MQ=255)              tCACGACCTGATGGTCGAGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCctgct                                                                                                                                      <  2:478401/150‑1 (MQ=255)               cACGACCTGATGGTCGAGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTg                                                                                                                                     <  2:410539‑M2/150‑2 (MQ=255)                               aGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACTCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGa                                                                                                                     <  1:330364/150‑1 (MQ=255)                                  gcgcTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCa                                                                                                                  >  1:238616/1‑150 (MQ=255)                                    gcTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGATCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAAc                                                                                                                <  1:143418/150‑1 (MQ=255)                                          cgcCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTTACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAg                                                                                                          <  2:131911/150‑1 (MQ=255)                                             cTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCtt                                                                                                       >  1:568616/1‑150 (MQ=255)                                                   cAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCGAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCa                                                                                                                                 >  1:315998/1‑118 (MQ=255)                                                   cAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCGAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCa                                                                                                                                 <  2:315998/118‑1 (MQ=255)                                                     ggAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCa                                                                                                                                 <  1:746952/116‑1 (MQ=255)                                                     ggAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCa                                                                                                                                 >  2:746952/1‑116 (MQ=255)                                                     ggAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCATCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTa                                                                                               >  1:31523/1‑150 (MQ=255)                                                      gAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTAc                                                                                              >  1:660671/1‑150 (MQ=255)                                                      gAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTAc                                                                                              <  2:473778/150‑1 (MQ=255)                                                      gAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCATCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTAc                                                                                              <  2:31523/150‑1 (MQ=255)                                                                        aCGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGAt                                                                            <  1:664672/150‑1 (MQ=255)                                                                         cGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATc                                                                           <  1:547737/150‑1 (MQ=255)                                                                           cTGATCAACGCCAAACGCCTGGCCCAGACCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCACAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGc                                                                         <  1:193045/150‑1 (MQ=255)                                                                              aTCAACGCCAAACGCCTGGCCCAGTCCCAGGACGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCtt                                                                      <  2:630387/150‑1 (MQ=255)                                                                                cAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTaa                                                                    >  1:284122/1‑150 (MQ=255)                                                                                           gCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTc                                                                                                     >  1:479264/1‑106 (MQ=255)                                                                                           gCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTc                                                                                                     <  2:479264/106‑1 (MQ=255)                                                                                           gCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGAccc                                                         >  1:50012/1‑150 (MQ=255)                                                                                            ccTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCagcaggctgctgccgccggcc                                                                                                                                  >  1:729223‑M1/1‑55 (MQ=255)                                                                                            ccTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCagcaggctgctgccgccggcc                                                                                                                                  <  2:729223‑M1/76‑22 (MQ=255)                                                                                            ccTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCca                                                        <  1:410539/150‑1 (MQ=255)                                                                                                      tCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTg                                              >  1:675173/1‑150 (MQ=255)                                                                                                        ccAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTgcg                                            >  1:148581/1‑150 (MQ=255)                                                                                                         cAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAGCTGACCCAGCAGAACCTgcgc                                           >  2:409588/1‑150 (MQ=255)                                                                                                          aGGAAGCCGTCACCCAGCAGTCGATCGGGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCa                                          >  2:204224/1‑150 (MQ=255)                                                                                                                 cGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCagcaggctgctgccgccggcctt                                                                                                                                >  2:200615‑M1/1‑34 (MQ=255)                                                                                                                 cGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCagcaggctgctgccgccggcctt                                                                                                                                <  1:200615‑M1/57‑24 (MQ=255)                                                                                                                  gTCACCCAGCAGTCGATCGAGGATCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAagcag                                  >  1:208870/1‑150 (MQ=255)                                                                                                                    cACCCAGCAGTCGATCGAGGCTCAGAGGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAagcagca                                <  1:545218/150‑1 (MQ=255)                                                                                                                       ccAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGAt                                                                            <  1:427735/103‑1 (MQ=255)                                                                                                                       ccAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGAt                                                                            >  2:427735/1‑103 (MQ=255)                                                                                                                        cagcagTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGGGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCta                            >  1:162472/1‑149 (MQ=255)                                                                                                                             gTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAg                       >  2:144178/1‑150 (MQ=255)                                                                                                                                  tcgaGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAGCCTGa                  <  2:50012/150‑1 (MQ=255)                                                                                                                                      ggCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAGCCTGACCCa              <  2:660671/150‑1 (MQ=255)                                                                                                                                         tCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAGCCTGACCCAGGc           >  2:96955/1‑150 (MQ=255)                                                                                                                                             aaGGCCGGCGGCAGCAGCCTGCTggccttctgagcctcgatcgactgctgggtgacg                                                                                                    >  2:200615‑M2/1‑23 (MQ=255)                                                                                                                                             aaGGCCGGCGGCAGCAGCCTGCTggccttctgagcctcgatcgactgctgggtgacg                                                                                                    <  1:200615‑M2/57‑35 (MQ=255)                                                                                                                                               ggCCGGCGGCAGCAGCCTGCTggccttctgagcctcgatcgactgctgggtgacggcttcctgggactgggccagg                                                                               >  1:729223‑M2/1‑21 (MQ=255)                                                                                                                                               ggCCGGCGGCAGCAGCCTGCTggccttctgagcctcgatcgactgctgggtgacggcttcctgggactgggccagg                                                                               <  2:729223‑M2/76‑56 (MQ=255)                                                                                                                                                  cagcaggctgctgccgccggccttctgagcctcgatcgactgctgggtgacggcttcctgggactgggccaggcgtttggcgttgatcagcgtctgcaggtcctggatttcctgctccaggcgcgcagcgcgctcgaccatcaggtcgtg  <  2:410539‑M1/150‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                      TCGGCAATGCGCGTCACGACCTGATGGTCGAGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAGCCTGACCCAGGCCGACCAGGC  >  NC_002947/5782228‑5782522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.