New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5782373	38 (1.290)	4 (0.140)	4/238	NT	10.4%	coding (792/3309 nt)	kefA	intermediate mechanosensitive channel protein
	?	NC_002947	= 5782390	32 (1.120)					coding (809/3309 nt)	kefA	intermediate mechanosensitive channel protein

TCACGACCTGATGGTCGAGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAGCCTGACCCAGGCCGACCAGGCGCTTGACGAGCAGA  >  NC_002947/5782241‑5782536                                                                                                                                                      |                                                                                                                                                   tCACGACCTGATGGTCGAGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCctgct                                                                                                                                                    <  2:478401/150‑1 (MQ=255)  cACGACCTGATGGTCGAGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTg                                                                                                                                                   <  2:410539‑M2/150‑2 (MQ=255)                  aGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACTCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGa                                                                                                                                   <  1:330364/150‑1 (MQ=255)                     gcgcTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCa                                                                                                                                >  1:238616/1‑150 (MQ=255)                       gcTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGATCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAAc                                                                                                                              <  1:143418/150‑1 (MQ=255)                             cgcCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTTACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAg                                                                                                                        <  2:131911/150‑1 (MQ=255)                                cTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCtt                                                                                                                     >  1:568616/1‑150 (MQ=255)                                      cAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCGAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCa                                                                                                                                               >  1:315998/1‑118 (MQ=255)                                      cAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCGAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCa                                                                                                                                               <  2:315998/118‑1 (MQ=255)                                        ggAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCa                                                                                                                                               <  1:746952/116‑1 (MQ=255)                                        ggAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCa                                                                                                                                               >  2:746952/1‑116 (MQ=255)                                        ggAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCATCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTa                                                                                                             >  1:31523/1‑150 (MQ=255)                                         gAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTAc                                                                                                            <  2:473778/150‑1 (MQ=255)                                         gAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTAc                                                                                                            >  1:660671/1‑150 (MQ=255)                                         gAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCATCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTAc                                                                                                            <  2:31523/150‑1 (MQ=255)                                                           aCGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGAt                                                                                          <  1:664672/150‑1 (MQ=255)                                                            cGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATc                                                                                         <  1:547737/150‑1 (MQ=255)                                                              cTGATCAACGCCAAACGCCTGGCCCAGACCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCACAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGc                                                                                       <  1:193045/150‑1 (MQ=255)                                                                 aTCAACGCCAAACGCCTGGCCCAGTCCCAGGACGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCtt                                                                                    <  2:630387/150‑1 (MQ=255)                                                                   cAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTaa                                                                                  >  1:284122/1‑150 (MQ=255)                                                                              gCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTc                                                                                                                   >  1:479264/1‑106 (MQ=255)                                                                              gCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTc                                                                                                                   <  2:479264/106‑1 (MQ=255)                                                                              gCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGAccc                                                                       >  1:50012/1‑150 (MQ=255)                                                                               ccTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCca                                                                      <  1:410539/150‑1 (MQ=255)                                                                                         tCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTg                                                            >  1:675173/1‑150 (MQ=255)                                                                                           ccAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTgcg                                                          >  1:148581/1‑150 (MQ=255)                                                                                            cAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAGCTGACCCAGCAGAACCTgcgc                                                         >  2:409588/1‑150 (MQ=255)                                                                                             aGGAAGCCGTCACCCAGCAGTCGATCGGGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCa                                                        >  2:204224/1‑150 (MQ=255)                                                                                                     gTCACCCAGCAGTCGATCGAGGATCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAagcag                                                >  1:208870/1‑150 (MQ=255)                                                                                                       cACCCAGCAGTCGATCGAGGCTCAGAGGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAagcagca                                              <  1:545218/150‑1 (MQ=255)                                                                                                          ccAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGAt                                                                                          >  2:427735/1‑103 (MQ=255)                                                                                                          ccAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGAt                                                                                          <  1:427735/103‑1 (MQ=255)                                                                                                           cagcagTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGGGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCta                                          >  1:162472/1‑149 (MQ=255)                                                                                                                gTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAg                                     >  2:144178/1‑150 (MQ=255)                                                                                                                     tcgaGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAGCCTGa                                <  2:50012/150‑1 (MQ=255)                                                                                                                         ggCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAGCCTGACCCa                            <  2:660671/150‑1 (MQ=255)                                                                                                                            tCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAGCCTGACCCAGGc                         >  2:96955/1‑150 (MQ=255)                                                                                                                                aaGGCCGGCGGCAGCAGCCTGCTggccttctgagcctcgatcgactgctgggtgacg                                                                                                                  <  1:200615‑M2/57‑35 (MQ=255)                                                                                                                                aaGGCCGGCGGCAGCAGCCTGCTggccttctgagcctcgatcgactgctgggtgacg                                                                                                                  >  2:200615‑M2/1‑23 (MQ=255)                                                                                                                                  ggCCGGCGGCAGCAGCCTGCTggccttctgagcctcgatcgactgctgggtgacggcttcctgggactgggccagg                                                                                             >  1:729223‑M2/1‑21 (MQ=255)                                                                                                                                  ggCCGGCGGCAGCAGCCTGCTggccttctgagcctcgatcgactgctgggtgacggcttcctgggactgggccagg                                                                                             <  2:729223‑M2/76‑56 (MQ=255)                                                                                                                                                 ccTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAGCCTGACCCAGGCCGACCAGGCGCTTGACGAGCa    <  1:206972/150‑1 (MQ=255)                                                                                                                                                   tgctgGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGTAATGGCCCAGCAGAACCTCCTCACCAAGCATCAGCTCGACAGCCTGACCCAGGCCGACCAGGCGCTTGACGAGCAGa  <  1:96955/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   TCACGACCTGATGGTCGAGCGCGCTGCGCGCCTGGAGCAGGAAATCCAGGACCTGCAGACGCTGATCAACGCCAAACGCCTGGCCCAGTCCCAGGAAGCCGTCACCCAGCAGTCGATCGAGGCTCAGAAGGCCGGCGGCAGCAGCCTGCTGGCCACTGAAAGCGCGATCAACCTCAAGCTTTCCGACTACCTGCTCAAGAGCACCGATCGCCTTAACGAACTGACCCAGCAGAACCTGCGCACCAAGCAGCAGCTCGACAGCCTGACCCAGGCCGACCAGGCGCTTGACGAGCAGA  >  NC_002947/5782241‑5782536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.