New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5945253	35 (1.180)	4 (0.140)	4/238	NT	10.5%	coding (346/969 nt)	PP_5212	iron‑sulfur‑binding oxidoreductase
	?	NC_002947	= 5945286	34 (1.190)					coding (313/969 nt)	PP_5212	iron‑sulfur‑binding oxidoreductase

GCACCGCACTGGGCTCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGG  >  NC_002947/5945106‑5945402                                                                                                                                                    |                                                                                                                                                       gCACCGCACTGGGCTCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcag                                                                                                                                                      <  1:283977/150‑1 (MQ=255)   aCCGCACTGGGCTCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcaggc                                                                                                                                                    >  2:224733/1‑150 (MQ=255)   aCCGCACTGGGCTCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcaggc                                                                                                                                                    >  2:299799/1‑150 (MQ=255)     cGCACTGGGCTCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcaggcgc                                                                                                                                                  >  2:242347/1‑150 (MQ=255)             gCTCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGACGGGCGGTCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcaggcgcacgcaggc                                                                                                                                          <  1:48670/150‑1 (MQ=255)               tCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcaggcgcacgca                                                                                                                                             >  2:361335/1‑145 (MQ=255)               tCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcaggcgcacgca                                                                                                                                             <  1:361335/145‑1 (MQ=255)                cACGCGCCAGCACATGCAGCTCCAGTTCACGCCGGGCATGTGGCGCGAACGCCAGCGAGAAAGCCGCCTGCTTGGCACCATCACGTTCGATAATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGgcaggcgcacgcaggcgca                                                                                                                                       <  1:654362/150‑1 (MQ=255)                         gCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGa                                                                                                                             >  1:370869/1‑150 (MQ=255)                          cacaTGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGAc                                                                                                                            >  1:70357/1‑150 (MQ=255)                            caTGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGt                                                                                                                          <  2:658965/150‑1 (MQ=255)                                        gTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCggcgacgtctggcgggtgcgcctgcgtgcgcctgccggcaa                                                                                                               >  2:543798‑M1/1‑109 (MQ=255)                                        gTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCggcgacgtctggcgggtgcgcctgcgtgcgcctgccggcaa                                                                                                               <  1:543798‑M1/150‑42 (MQ=255)                                          tCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGGCGGCGACGTct                                                                                                            <  1:224733/150‑2 (MQ=255)                                                  ggCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGcactc                                                                                                    >  2:304033/1‑150 (MQ=255)                                                    cATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGcactcac                                                                                                  >  2:554678/1‑150 (MQ=255)                                                         ggCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACg                                                                                             <  1:554678/150‑1 (MQ=255)                                                          gcgcGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGc                                                                                            >  2:179004/1‑150 (MQ=255)                                                           cgcgGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCt                                                                                           <  2:433051/150‑1 (MQ=255)                                                                    cAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAg                                                                                  >  2:639/1‑150 (MQ=255)                                                                         agaAGGCTGCCTGCATGACGCCATCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTgc                                                                             <  2:208651/150‑1 (MQ=255)                                                                              cgtcgctgcTTGCCGCCCCCATGATCTAGTATCAGGTAGTCGCCCGGTTCGTACCGCAGAGCCTTGCCTGCAGGCGCACCCATGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACt                                                                        <  2:249905/145‑1 (MQ=255)                                                                               ctgcctgcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTg                                                                       <  1:304033/150‑1 (MQ=255)                                                                                  cctgcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCGATAAG‑CTCCGCCGACGTCGACGCCATCACCGACGCTGCCCGCCAGCTTGCGCACTGGCa                                                                    >  1:8037/1‑150 (MQ=255)                                                                                  cctgcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCa                                                                    >  2:296088/1‑150 (MQ=255)                                                                                      cTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGAGGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTc                                                                >  2:534850/1‑150 (MQ=255)                                                                                            gccCTCACGTTCGATCCTCGGTTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCaa                                                          <  1:242347/150‑1 (MQ=255)                                                                                                 cACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCaa                                                     >  2:385067/1‑150 (MQ=255)                                                                                                        gATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACAcc                                              <  1:639/150‑1 (MQ=255)                                                                                                             tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCggcgacgtctggcgggtgcgcctgcgtgcgcctgccg                                                                                                                   >  2:130502‑M1/1‑40 (MQ=255)                                                                                                             tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCggcgacgtctggcgggtgcgcctgcgtgcgcctgccg                                                                                                                   <  1:130502‑M1/77‑38 (MQ=255)                                                                                                             tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCTACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTccc                                         <  1:296088/150‑1 (MQ=255)                                                                                                             tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCACC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTccc                                         <  2:772865/150‑1 (MQ=255)                                                                                                                 gTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCagag                                     >  1:207569/1‑150 (MQ=255)                                                                                                                 gTACTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGCCGCACTCACTGACGCTGCACGCCAGCTTGCCCACTGGCAGTTCGCCCAAGGCAAGCACCCCCTCCCacac                                     >  2:337671/1‑147 (MQ=255)                                                                                                                       ccccGCGTGGTAGCGCAGATGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAacac                               >  2:196154/1‑150 (MQ=255)                                                                                                                                 tAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGtcctcc                     >  2:365681/1‑150 (MQ=255)                                                                                                                                    cgcAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGc                  <  2:728835/150‑1 (MQ=255)                                                                                                                                     gcAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCg                 >  1:326313/1‑150 (MQ=255)                                                                                                                                           gCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTgg                                                                      <  1:128864/91‑1 (MQ=255)                                                                                                                                           gCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTgg                                                                      >  2:128864/1‑91 (MQ=255)                                                                                                                                             ttGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCgccggcaagcctctgcgctaccacgcggggcaatacctgatgatcgaacgtgagggcggcaagcaggcagccttctcgctggcgtccgcgccacatgccgggcgtgaac         <  1:543798‑M2/150‑110 (MQ=255)                                                                                                                                             ttGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCgccggcaagcctctgcgctaccacgcggggcaatacctgatgatcgaacgtgagggcggcaagcaggcagccttctcgctggcgtccgcgccacatgccgggcgtgaac         >  2:543798‑M2/1‑41 (MQ=255)                                                                                                                                               gCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAAt       <  1:299799/150‑1 (MQ=255)                                                                                                                                                 cGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCgccggcaagcctctgcgctaccacgcggggcaatacctga                                                                              <  1:130502‑M2/77‑41 (MQ=255)                                                                                                                                                 cGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCgccggcaagcctctgcgctaccacgcggggcaatacctga                                                                              >  2:130502‑M2/1‑37 (MQ=255)                                                                                                                                                 cGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGc     >  2:325667/1‑150 (MQ=255)                                                                                                                                                   gcaggcgcacgcaggcggacCGGCC‑AGACGTCGCCGCCGACGGCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAg   <  2:370869/150‑1 (MQ=255)                                                                                                                                                    caggcgcgcgcaggcgcacCGGCC‑AGCCCGCCCCGCGCCCGGCGACTCGCTGACTGACGCTGCACGCCAGCCCAGCTTGTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGTAGTCCTCCAGCGGTTCGGCAATGCAgg  <  1:575206/150‑1 (MQ=255)                                                                                                                                                    caggcgcacgcaggcgcacCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAgg  <  1:325667/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                       GCACCGCACTGGGCTCACGCGCCAGCACATGCAGCTCCAGTTCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGG  >  NC_002947/5945106‑5945402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.