New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5945253	35 (1.180)	4 (0.140)	4/238	NT	10.5%	coding (346/969 nt)	PP_5212	iron‑sulfur‑binding oxidoreductase
	?	NC_002947	= 5945286	34 (1.190)					coding (313/969 nt)	PP_5212	iron‑sulfur‑binding oxidoreductase

TCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACT  >  NC_002947/5945147‑5945428                                                                                                                                             |                                                                                                                                               tCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGGCGGCGACGTct                                                                                                                                      <  1:224733/150‑2 (MQ=255)         ggCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGcactc                                                                                                                              >  2:304033/1‑150 (MQ=255)           cATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGcactcac                                                                                                                            >  2:554678/1‑150 (MQ=255)                ggCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACg                                                                                                                       <  1:554678/150‑1 (MQ=255)                 gcgcGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGc                                                                                                                      >  2:179004/1‑150 (MQ=255)                  cgcgGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCt                                                                                                                     <  2:433051/150‑1 (MQ=255)                           cAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAg                                                                                                            >  2:639/1‑150 (MQ=255)                                agaAGGCTGCCTGCATGACGCCATCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTgc                                                                                                       <  2:208651/150‑1 (MQ=255)                                     cgtcgctgcTTGCCGCCCCCATGATCTAGTATCAGGTAGTCGCCCGGTTCGTACCGCAGAGCCTTGCCTGCAGGCGCACCCATGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACt                                                                                                  <  2:249905/145‑1 (MQ=255)                                      ctgcctgcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTg                                                                                                 <  1:304033/150‑1 (MQ=255)                                         cctgcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCGATAAG‑CTCCGCCGACGTCGACGCCATCACCGACGCTGCCCGCCAGCTTGCGCACTGGCa                                                                                              >  1:8037/1‑150 (MQ=255)                                         cctgcTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCa                                                                                              >  2:296088/1‑150 (MQ=255)                                             cTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGAGGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTc                                                                                          >  2:534850/1‑150 (MQ=255)                                                   gccCTCACGTTCGATCCTCGGTTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCaa                                                                                    <  1:242347/150‑1 (MQ=255)                                                        cACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCaa                                                                               >  2:385067/1‑150 (MQ=255)                                                               gATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACAcc                                                                        <  1:639/150‑1 (MQ=255)                                                                    tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCTACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTccc                                                                   <  1:296088/150‑1 (MQ=255)                                                                    tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCACC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTccc                                                                   <  2:772865/150‑1 (MQ=255)                                                                        gTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCagag                                                               >  1:207569/1‑150 (MQ=255)                                                                        gTACTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGCCGCACTCACTGACGCTGCACGCCAGCTTGCCCACTGGCAGTTCGCCCAAGGCAAGCACCCCCTCCCacac                                                               >  2:337671/1‑147 (MQ=255)                                                                              ccccGCGTGGTAGCGCAGATGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAacac                                                         >  2:196154/1‑150 (MQ=255)                                                                                        tAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGtcctcc                                               >  2:365681/1‑150 (MQ=255)                                                                                           cgcAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGc                                            <  2:728835/150‑1 (MQ=255)                                                                                            gcAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCg                                           >  1:326313/1‑150 (MQ=255)                                                                                                  gCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTgg                                                                                                >  2:128864/1‑91 (MQ=255)                                                                                                  gCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTgg                                                                                                <  1:128864/91‑1 (MQ=255)                                                                                                    ttGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCgccggcaagcctctgcgctaccacgcggggcaatacctgatgatcgaacgtgagggcggcaagcaggcagccttctcgctggcgtccgcgccacatgccgggcgtgaac                                   <  1:543798‑M2/150‑110 (MQ=255)                                                                                                    ttGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCgccggcaagcctctgcgctaccacgcggggcaatacctgatgatcgaacgtgagggcggcaagcaggcagccttctcgctggcgtccgcgccacatgccgggcgtgaac                                   >  2:543798‑M2/1‑41 (MQ=255)                                                                                                      gCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAAt                                 <  1:299799/150‑1 (MQ=255)                                                                                                        cGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCgccggcaagcctctgcgctaccacgcggggcaatacctga                                                                                                        <  1:130502‑M2/77‑41 (MQ=255)                                                                                                        cGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCgccggcaagcctctgcgctaccacgcggggcaatacctga                                                                                                        >  2:130502‑M2/1‑37 (MQ=255)                                                                                                        cGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGc                               >  2:325667/1‑150 (MQ=255)                                                                                                          gcaggcgcacgcaggcggacCGGCC‑AGACGTCGCCGCCGACGGCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAg                             <  2:370869/150‑1 (MQ=255)                                                                                                           caggcgcgcgcaggcgcacCGGCC‑AGCCCGCCCCGCGCCCGGCGACTCGCTGACTGACGCTGCACGCCAGCCCAGCTTGTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGTAGTCCTCCAGCGGTTCGGCAATGCAgg                            <  1:575206/150‑1 (MQ=255)                                                                                                           caggcgcacgcaggcgcacCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAgg                            <  1:325667/150‑1 (MQ=255)                                                                                                            aggcgcacgcaggcgcacCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGt                           <  1:325426/150‑1 (MQ=255)                                                                                                                    gcaggcgcacCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTc                                                                                          >  2:681687/1‑79 (MQ=255)                                                                                                                    gcaggcgcacCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTc                                                                                          <  1:681687/79‑1 (MQ=255)                                                                                                                                      aCGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACt  >  2:559206/1‑150 (MQ=255)                                                                                                                                             |                                                                                                                                               TCACGCCCGGCATGTGGCGCGGACGCCAGCGAGAAGGCTGCCTGCTTGCCGCCCTCACGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCC‑AGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACT  >  NC_002947/5945147‑5945428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.