New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 205612	28 (0.950)	12 (0.420)	8/236	NT	31.2%	coding (11118/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 205620	26 (0.920)					coding (11126/26049 nt)	PP_0168	putative surface adhesion protein

CGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGA  >  NC_002947/205474‑205746                                                                                                                                                   |                                                                                                                               cGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTggt                                                                                                                             >  2:624564‑M2/1‑147 (MQ=255)  gCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTggtg                                                                                                                            >  2:703198‑M2/1‑146 (MQ=255)  gCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTggtg                                                                                                                            <  1:41817‑M2/150‑5 (MQ=255)   cTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTggtgg                                                                                                                           >  2:41817‑M2/1‑145 (MQ=255)   cTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTggtgg                                                                                                                           >  2:507438‑M2/1‑145 (MQ=255)                    gTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGAcc                                                                                                          >  1:713552/1‑150 (MQ=255)                               tGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGAGGTGGCCGTGCTGACCGCGACCCCCTCGGTCAc                                                                                               >  2:498704/1‑150 (MQ=255)                                    gCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGt                                                                                                      <  2:732734/138‑1 (MQ=255)                                    gCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGt                                                                                                      >  1:732734/1‑138 (MQ=255)                                      cAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAggc                                                                                        >  1:599861/1‑150 (MQ=255)                                       aGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAggcg                                                                                       <  2:676376/150‑1 (MQ=40)                                           cAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCga                                                                                   <  1:498704/150‑1 (MQ=40)                                                 gggTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCAc                                                                             <  2:599861/150‑1 (MQ=255)                                                       cAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTacac                                                                       <  2:713552/150‑1 (MQ=255)                                                                 gTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTg                                                             >  1:684598/1‑150 (MQ=40)                                                                    gATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTc                                                                                                     <  1:527437/107‑1 (MQ=38)                                                                    gATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTc                                                                                                     >  2:527437/1‑107 (MQ=38)                                                                    gATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGaa                                                                                           <  2:223482/117‑1 (MQ=37)                                                                    gATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGaa                                                                                           >  1:223482/1‑117 (MQ=37)                                                                      ggctaCTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACcaa                                                        <  1:649022/146‑1 (MQ=25)                                                                                    ccTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGc                                          >  1:231084/1‑150 (MQ=34)                                                                                     cTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACC‑ACTTCGTcggtggtgtcggtcact                                                                                                               <  2:190020‑M2/79‑18 (MQ=255)                                                                                     cTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACC‑ACTTCGTcggtggtgtcggtcact                                                                                                               >  1:190020‑M2/1‑62 (MQ=255)                                                                                     cTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACC‑ACTTCGTcggtggtgtcggtcact                                                                                                               <  2:587127‑M2/79‑18 (MQ=255)                                                                                     cTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACC‑ACTTCGTcggtggtgtcggtcact                                                                                                               >  1:587127‑M2/1‑62 (MQ=255)                                                                                      ttCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAg                                                                                          >  1:731378/1‑100 (MQ=34)                                                                                      ttCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAg                                                                                          <  2:731378/100‑1 (MQ=34)                                                                                              ccTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGcc                                         <  1:653642/141‑1 (MQ=34)                                                                                              ccTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGcc                                         >  2:653642/1‑141 (MQ=35)                                                                                                               aCGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCt               <  2:684598/150‑1 (MQ=39)                                                                                                                  cTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCa            <  2:231084/150‑1 (MQ=37)                                                                                                                           aaGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAg                                                   >  1:409274/1‑102 (MQ=38)                                                                                                                           aaGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAg                                                   <  2:409274/102‑1 (MQ=38)                                                                                                                                  cGACACCACCGACGAAGTggtggtgtcggtcacttgaaccgaagcgttgccgcccagttgcaggttctcgaaggtcgcaccagtggcatc                                                        >  1:497538‑M2/1‑18 (MQ=255)                                                                                                                                  cGACACCACCGACGAAGTggtggtgtcggtcacttgaaccgaagcgttgccgcccagttgcaggttctcgaaggtcgcaccagtggcatc                                                        <  2:497538‑M2/90‑73 (MQ=255)                                                                                                                                   gACACCACCGACGAAGTggtggtgtcggtcacttgaaccgaagcgttgccgcccagttgcaggttctcgaaggtcgcaccagtggcatccaccgccgagttgatacccaggctgatctggccagcatcgttgtagacgtcatc  <  2:522687‑M2/143‑127 (MQ=255)                                                                                                                                   gACACCACCGACGAAGTggtggtgtcggtcacttgaaccgaagcgttgccgcccagttgcaggttctcgaaggtcgcaccagtggcatccaccgccgagttgatacccaggctgatctggccagcatcgttgtagacgtcatc  >  1:522687‑M2/1‑17 (MQ=255)                                                                                                                                    acacCACCGACGCAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGc    >  2:314515/1‑140 (MQ=21)                                                                                                                                    acacCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGc    <  1:314515/140‑1 (MQ=35)                                                                                                                                      accaccGACGAAGTggtggtgtcggtgacttgaaccgaagcgttg                                                                                                 >  1:635432‑M2/1‑14 (MQ=255)                                                                                                                                      accaccGACGAAGTggtggtgtcggtgacttgaaccgaagcgttg                                                                                                 <  2:635432‑M2/45‑32 (MQ=255)                                                                                                                                        caccGACGAAGTggtggtgtcggtcacttgaaccgaagcgttgccgcccagttgcaggttctcgaaggtcgcaccagtg                                                             >  1:54947‑M2/1‑12 (MQ=255)                                                                                                                                        caccGACGAAGTggtggtgtcggtcacttgaaccgaagcgttgccgcccagttgcaggttctcgaaggtcgcaccagtg                                                             <  2:54947‑M2/79‑68 (MQ=255)                                                                                                                                                   |                                                                                                                               CGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGA  >  NC_002947/205474‑205746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.