New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5159824	25 (0.850)	9 (0.410)	7/184	NT	27.8%	intergenic (+39/+67)	PP_4542/PP_4543	ABC transporter ATP‑binding protein/permease/hypothetical protein
	?	NC_002947	= 5159839	28 (1.270)					intergenic (+54/+52)	PP_4542/PP_4543	ABC transporter ATP‑binding protein/permease/hypothetical protein

CGAGAGTGGCAGCCACAGTGAGTTGCTGGAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCG  >  NC_002947/5159692‑5159983                                                                                                                                                    |                                                                                                                                                  cGAGAGTGGCAGCCACAGTGAGTTGCTGGCGCAGCAAGGGCTGTATCGGAGGGTGTGGCTCCTCCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtg                                                                                                                                                 <  1:614049‑M2/150‑3 (MQ=255)  gagaGTGGCAGCCACAGTGAGTTGCTGGAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgt                                                                                                                                                <  1:780461‑M2/150‑4 (MQ=255)     agTGGCAGCCACAGTGAGTTGCTGGAGCAGCAAGGGCTGTNTGCCCGATTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGATATCGTtgtagg                                                                                                                                             <  1:537465‑M2/150‑7 (MQ=255)       tGGCAGCCACAGTGAGTTGCTGGAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTt                                                                                                                                                  <  1:751113‑M2/143‑2 (MQ=255)       tGGCAGCCACAGTGAGTTGCTGGAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTt                                                                                                                                                  >  2:751113‑M2/1‑142 (MQ=255)          cAGCCACAGTGAGTTGCTGGAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcgg                                                                                                                                        >  2:780461‑M2/1‑139 (MQ=255)          cAGCCACAGTGAGTTGCTGGAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcgg                                                                                                                                        >  1:610184‑M2/1‑139 (MQ=255)           aGCCACAGTGAGTTGCTGGAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcggg                                                                                                                                       >  2:614049‑M2/1‑138 (MQ=255)                      gTTGCTGGAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcga                                                                                                                            <  2:451853‑M2/150‑24 (MQ=255)                         gCTGGAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaaaa                                                                                                                         >  1:34824‑M2/1‑124 (MQ=255)                           tGGAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaaaagg                                                                                                                       >  2:303667‑M2/1‑122 (MQ=255)                             gAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaaaaggcc                                                                                                                     >  1:782100‑M2/1‑120 (MQ=255)                             gAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaaaaggcc                                                                                                                     <  2:782100‑M2/150‑31 (MQ=255)                               gcagcaAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcggg                                                                                                                                       <  2:72349‑M2/130‑13 (MQ=255)                               gcagcaAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcggg                                                                                                                                       >  1:72349‑M2/1‑118 (MQ=255)                                       ggCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcgg                                                                                                                                        <  2:151586‑M2/121‑12 (MQ=255)                                       ggCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcgg                                                                                                                                        >  1:151586‑M2/1‑110 (MQ=255)                                            tttccccGGTTGGGGCACCACCAGACCGGGGGTTTTGTCGGGGTCGATGGCCACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAAcaca                                                                                                     <  2:775495/146‑1 (MQ=38)                                              tGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGa                                                                                                   >  1:302613/1‑150 (MQ=255)                                               gCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGTCAGGA‑AGAACGGGCCCGCGAAAAGGCCGGCACAGGCAACACAGag                                                                                                  >  1:775495/1‑149 (MQ=255)                                                cccGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGAGTGACACCTGCGCGGCCTTTTCGCGGGTAGGCCCGATGCTACACAGGTTCGCCAGCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGAtc                                                                                                 >  1:453669/1‑150 (MQ=38)                                                 ccGCTTGTTGCACCACCAGTCCGGAGTTTTTGTCGGGCTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGTTCCTCCACAGTTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGAtct                                                                                                <  2:348353/150‑1 (MQ=37)                                                           caccacCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCcg                                                                                      >  1:34114/1‑150 (MQ=255)                                                                           gTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgc                                                                                                                              <  2:262432‑M2/95‑22 (MQ=255)                                                                           gTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgc                                                                                                                              >  1:262432‑M2/1‑74 (MQ=255)                                                                             tttGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATccc                                                                    <  2:540239/150‑1 (MQ=255)                                                                                    gggTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCGCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGcc                                                             >  1:487458/1‑150 (MQ=255)                                                                                        cGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCtt                                                         >  1:423167/1‑150 (MQ=255)                                                                                               cagcTGCGCGGCGGTTGGTCGAGTTAACCCGCTCCTAAACAGGTTCCCTATCGTTGT‑AGGAACGGAGTTACCCGCGAAAAGGCCGGCACAGGCAACACAAATATCTCAATCCCGGCGGTAGGGCAACATACCCCGCGCCTCTTCGGcctg                                                  >  2:572608/4‑147 (MQ=255)                                                                                                  cTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATAccc                                               >  2:278719/1‑150 (MQ=255)                                                                                                     cgcgGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCtt                                            <  2:423167/150‑1 (MQ=255)                                                                                                        ggCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCTGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCcgg                                                                                     <  1:783390/106‑1 (MQ=255)                                                                                                        ggCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCTGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCcgg                                                                                     >  2:783390/1‑106 (MQ=255)                                                                                                        ggCCTTTTCGAAGGTAACCCCGCTCCTACACAGGTTCGCTATCGTTGT‑ATGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGAc                                         <  1:122762/150‑1 (MQ=255)                                                                                                            ttttCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTTACCCCt                                     >  1:257724/1‑150 (MQ=255)                                                                                                                         aCCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTgc                         <  2:182564/149‑1 (MQ=255)                                                                                                                         aCCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTgc                         >  1:182564/1‑149 (MQ=255)                                                                                                                          cccGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATACCCCCTACCCGGCGGTAGGGCAACATCCCCCGCGACTATTCGGCATGCGCCTTGACCCCTTCCCGTTTCTgcag                       >  1:336963/1‑150 (MQ=37)                                                                                                                           ccGCTCCTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaacaggccgcgcaggtgtcaatcgaccccgacaaaacctccggtctggtggtgc                                                                       <  1:143043‑M2/102‑77 (MQ=255)                                                                                                                           ccGCTCCTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaaaaggccgcgcaggtgtcaatcgaccccgacaaaacctccggtctggtggtgccacaaccgggcatacagcccttgctgctccagcaactcactgtggctg                       <  2:211030‑M2/150‑125 (MQ=255)                                                                                                                           ccGCTCCTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaaaaggccgcgcaggtgtcaatcgaccccgacaaaacctccggtctggtggtgc                                                                       >  2:143043‑M2/1‑26 (MQ=255)                                                                                                                           ccGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACGGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGt                               >  2:593617/1‑141 (MQ=255)                                                                                                                           ccGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACGGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGt                               <  1:593617/141‑1 (MQ=255)                                                                                                                           ccGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCACGTTCCTgcagc                      >  2:141705/1‑150 (MQ=255)                                                                                                                               tCCTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaaaaggccgcgcaggtgtcaatcgaccccgacaaaacctccggtctggtggtgccacaaccgggcatacagcccttgctgctccagcaactcactgtggctgccac                   <  2:477348‑M2/150‑129 (MQ=255)                                                                                                                                 cTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaaaaggccgcgcaggtgtcaatcgaccccgacaaaacctccggtctggtggtgccacaaccgggcataca                                                       <  2:502145‑M2/112‑93 (MQ=255)                                                                                                                                 cTACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaaaaggccgcgcaggtgtcaatcgaccccgacaaaacctccggtctggtggtgccacaaccgggcataca                                                       >  1:502145‑M2/1‑20 (MQ=255)                                                                                                                                  tACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaaaaggccgcgcaggtgtcaatcgaccccgacaaaacctccggtctggtggtgccacaaccgggcatacagcccttgctgctccagcaactcactgtggctgccactct                <  2:154679‑M2/150‑132 (MQ=255)                                                                                                                                  tACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaaaaggccgcgcaggtgtcaatcgaccccgacaaaac                                                                                        >  2:143271‑M2/1‑19 (MQ=255)                                                                                                                                  tACACAGGTTCGCTATCGTtgtaggagcgggtttacccgcgaaaaggccgcgcaggtgtcaatcgaccccgacaaaac                                                                                        <  1:143271‑M2/78‑60 (MQ=255)                                                                                                                                   acacAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAAtc              <  2:258951/150‑1 (MQ=255)                                                                                                                                      caGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTAGATCCCTGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAAtcctc           <  1:138084/150‑1 (MQ=255)                                                                                                                                        ggTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCACGTTCCTGCAGCAGAAAATCCTCCa         <  1:141705/150‑1 (MQ=255)                                                                                                                                         gTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCAc        <  1:278719/150‑1 (MQ=255)                                                                                                                                             gCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCAccgcc    >  2:491961/1‑150 (MQ=255)                                                                                                                                               tATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCAccgcccg  >  2:649250/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CGAGAGTGGCAGCCACAGTGAGTTGCTGGAGCAGCAAGGGCTGTATGCCCGGTTGTGGCACCACCAGACCGGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGT‑AGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCG  >  NC_002947/5159692‑5159983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.