New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 359665	52 (1.360)	14 (0.390)	13/262	2.0	23.5%	intergenic (+22/+98)	gbdR/PP_0299	AraC family transcriptional regulator/hypothetical protein
	?	NC_002947	= 359732	42 (1.170)					intergenic (+89/+31)	gbdR/PP_0299	AraC family transcriptional regulator/hypothetical protein

GCTCCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/359513‑359665 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcggAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGC  <  NC_002947/359732‑359648                                                                                                                                                                                                                                                GCTCCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCG                                                                                          >  1:799575/1‑150  CTCCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGC                                                                                         >  1:754489/1‑150  CTCCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGC                                                                                         >  2:749047/1‑150     CAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGA                                                                                      >  1:471246/1‑150      AACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGAA                                                                                     >  2:680560/1‑150              GCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCG                                                                             <  1:680560/150‑1                           ATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTGTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCA                                                                <  2:810962/150‑1                                                   ACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCGATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGA                                       <  1:287549/150‑1                                                    CCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG                                                                                       <  1:475339/102‑1                                                    CCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG                                                                                       >  2:475339/1‑102                                                                             GGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAA             <  2:156279/150‑1                                                                                 GCCCTGAGCCAGGCGCGCAATCAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCAGGCGTGCCCGCGAAGAG          <  2:471246/150‑1                                                                                   CCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGC        <  2:862840/150‑1                                                                                   CCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGC        <  1:609469/150‑1                                                                                        GCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑ACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGC  <  2:823665/150‑1                                                                                                               TTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGG                          >  2:448464/1‑103                                                                                                               TTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGG                          <  1:448464/103‑1                                                                                                                    CAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGAC                                      <  1:858411/87‑1                                                                                                                    CAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGAC                                      >  2:858411/1‑87                                                                                                                                                                                                                                                GCTCCAACACCGCGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/359513‑359665 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcggAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGC  <  NC_002947/359732‑359648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.