New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 359665	52 (1.360)	14 (0.390)	13/262	2.0	23.5%	intergenic (+22/+98)	gbdR/PP_0299	AraC family transcriptional regulator/hypothetical protein
	?	NC_002947	= 359732	42 (1.170)					intergenic (+89/+31)	gbdR/PP_0299	AraC family transcriptional regulator/hypothetical protein

AGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTCCACCATCCCCTTCAGCG  >  NC_002947/359603‑359881                                                                                                                                  |                                                                                                                                                      aGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTg                                                                                                                                   <  2:727951/150‑1 (MQ=255)  ggCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGGGACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTgg                                                                                                                                  <  1:694575/150‑1 (MQ=255)  ggCGCGCAATGAGTCGACATTTGCCAGTGAACGGCTCTGTCACCGGGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTgg                                                                                                                                  <  1:884997/150‑1 (MQ=255)               tCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAgg                                                                                                                                              >  2:840474/1‑125 (MQ=255)               tCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAgg                                                                                                                                              <  1:840474/125‑1 (MQ=255)                     tttGCTAGTGTAAGGCTCTGACAGCGCGCCGGCATCTTCGCGGGCACGCCCGCTCTCACAGGACACCCGCTTCGCTTGAGCCAGCGGTGATTTGTGGGGGCGGGCGTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGt                                                                                                               <  2:575093/150‑1 (MQ=255)                         ccAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCAACGACGGGGCAGGGGCTGGGTAAATTGATTGCGCGCGTttgt                                                                                                           >  2:694360/1‑150 (MQ=38)                              gtAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAAc                                                                                                      >  1:164951/1‑150 (MQ=255)                               tAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATGTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACt                                                                                                     >  2:66991/1‑150 (MQ=255)                                      ctGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCaa                                                                                              <  2:570116/150‑1 (MQ=255)                                        gACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACg                                                                                            >  1:98630/1‑150 (MQ=255)                                        gACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCCCCCACAGGTCACCCGCTGGGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAGTGGATTACGCGCGTTTGTTGAACTGCGGCAACg                                                                                            >  2:303576/1‑150 (MQ=255)                                         acacCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGc                                                                                           <  2:678010/150‑1 (MQ=255)                                            ccGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTgc                                                                                                   <  2:767058/139‑1 (MQ=255)                                            ccGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTgc                                                                                                   >  1:767058/1‑139 (MQ=255)                                              gcgcCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTcgcgaagaggccggcgcggtgtcagagccttacactggcaaatgtcgactcattgcgcgcctggc                                                                                       <  2:823665‑M2/150‑66 (MQ=255)                                                 ccGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGaa                                                                                                       <  1:259451/130‑1 (MQ=255)                                                 ccGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGaa                                                                                                       >  2:259451/1‑130 (MQ=255)                                                   ggCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCGGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGt                                                                                 <  2:618811/150‑1 (MQ=255)                                                    gCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTccgcgaaggggccggcgcggtgtcagagccttacactggcaaatgtcgactcattgcgcgcctggctcagg                                                                                <  2:862840‑M2/150‑72 (MQ=255)                                                    gCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTccgcgaaggggccggcgcggtgtcagagccttacactggcaaatgtcgactcattgcgcgcctggctcagg                                                                                <  1:609469‑M2/150‑72 (MQ=255)                                                     ccTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTg                                                                               <  1:318282/150‑1 (MQ=255)                                                      ctctTCGCGGGCACGCCTGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTccgcgaagaggccggcgcggtgtcagagccttacactggcaaatgtcgactgattgcgcgcctggctcagggc                                                                              <  2:471246‑M2/150‑74 (MQ=255)                                                       tctTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCt                                                                             >  1:840367/1‑150 (MQ=255)                                                        ctTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCtt                                                                            <  1:704262/150‑1 (MQ=255)                                                         ttCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTg                                                                           <  2:295635/150‑1 (MQ=255)                                                         ttCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGCcgcgaagaggccggcgcggtgtcagagccttacactggcaaatgtcgactcattgcgcgcctggctcagggccgcc                                                                            <  2:156279‑M2/150‑77 (MQ=255)                                                          tCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGt                                                                          <  2:164951/150‑1 (MQ=255)                                                           cgcgGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTc                                                                         >  2:30959/1‑150 (MQ=255)                                                            gcgGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATNACGCGCGTTNGTTGAACTNCGCCAACGCTGGCAACAGTTGCTTGTCg                                                                        <  1:303576/150‑1 (MQ=255)                                                                  aCGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGcc                                                                  <  2:754489/150‑1 (MQ=255)                                                                    gCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTg                                                                <  2:445339/150‑1 (MQ=255)                                                                    gCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCCATGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTg                                                                <  1:694360/150‑1 (MQ=255)                                                                      ccGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGc                                                              >  1:510308/1‑150 (MQ=255)                                                                      ccGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCGTGCcgcgaagaggccggcgcggtgtcagagccttacactggcaaa                                                                                                              >  2:448464‑M2/1‑61 (MQ=255)                                                                      ccGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCGTGCcgcgaagaggccggcgcggtgtcagagccttacactggcaaa                                                                                                              <  1:448464‑M2/103‑43 (MQ=255)                                                                               caGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCg                                                     >  2:839784/1‑150 (MQ=255)                                                                                  gTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTccgcgaagaggccggcgcggtgtcagagccttacactg                                                                                                                 >  2:858411‑M2/1‑49 (MQ=255)                                                                                  gTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTccgcgaagaggccggcgcggtgtcagagccttacactg                                                                                                                 <  1:858411‑M2/87‑39 (MQ=255)                                                                                  gTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCa                                                  <  2:98630/150‑1 (MQ=255)                                                                                   tCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGAGCGGGCGTGCcgcgaagaggccggcgcggtgtcagagccttacactggcaaatgtcgactcatcgcgcgcctggctcagggccgccatcggcccgctgtgcggcgacagggt                                                  <  1:287549‑M2/150‑103 (MQ=255)                                                                                   ccACCCGCTGAACTTGAGCCAGCGGGGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAg                                                 <  2:510308/149‑1 (MQ=255)                                                                                    cACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAgg                                                <  2:409961/150‑1 (MQ=255)                                                                                      cccGCTGAGCTTGAGCCGGCGGTGATCTGTGGGGGCGCGCTTGCTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGAt                                              <  1:276642/150‑1 (MQ=255)                                                                                      cccGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGAt                                              <  2:252315/150‑1 (MQ=255)                                                                                                ttGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTg                                    >  2:500768/1‑150 (MQ=255)                                                                                                 tGAGCCAGCGGTGATCTGGGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCGGGCAACAGTTGCTTGTAGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGc                                   <  1:66991/150‑1 (MQ=255)                                                                                                        gCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTa                            >  1:579327/1‑150 (MQ=255)                                                                                                            tGATCTGTGGGGGCGGGCTTGTTccgcgaaggggccggcgcggtgtcacagccttacactggcaaatgtcgactcattgcgcgcctggctcagggccgccatcggcccgctgtgcggcgacagggtcatggcctgcggaatcggcatcat                        <  2:810962‑M2/150‑128 (MQ=255)                                                                                                                 tgtgGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTc                   <  2:569409/150‑1 (MQ=255)                                                                                                                 tgtgGGGGCGGGCTTGTTCCGCGAAGCGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGACTGGAGTACTGACGGCAGGATAGTCGCACTGACGGTGTACATCTGCTc                   >  1:445813/1‑150 (MQ=255)                                                                                                                         cgggcTTGTTccgcgaagaggccggcgcggtgtcagagccttacactggcaaatgtcgactcattgcgcgcctggctcagggccgccatcggcccgctgtgcggcgacagggtcatggcctgcggaatcggcatcatggccacctgctgc           <  1:680560‑M2/150‑141 (MQ=255)                                                                                                                           ggcTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAATAGTTTCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTCCACCATcccc         >  1:252749/1‑150 (MQ=255)                                                                                                                              ttGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTCCACCATCCCCTTc      <  1:30959/150‑1 (MQ=255)                                                                                                                                 ttccgcgaagaggccggcgcggtgtcagagccttacactggcaaatgtcgactcattgcgcgcctggctcagggccgccatcggcccgctgtgcggcgacagggtcatggcctgcggaatcggcatcatggccacctgctgcgcggtgtt   >  2:680560‑M2/1‑2 (MQ=255)                                                                                                                                  tccgcgaagaggccggcgcggtgtcagagccttacactggcaaatgtcgactcattgcgcgcctggctcagggccgccatcggcccgctgtgcggcgacagggtcatggcctgcggaatcggcatcatggccacctgctgcgcggtgttg  >  1:471246‑M2/1‑1 (MQ=255)                                                                                                                                  |                                                                                                                                                      AGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTCACCCGCTGAGCTTGAGCCAGCGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTCCACCATCCCCTTCAGCG  >  NC_002947/359603‑359881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.