New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1138537 =	36 (1.450)	7 (0.320)	7/236	1.7	20.8%	intergenic (‑62/+103)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase
	?	NC_002947	1138626 =	21 (0.950)					intergenic (‑151/+14)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase

GCGGAAAACCGCATGCACACGATCAAGGCGATCCTGGTATCGACCCTGGCTGATCTATAAGTAGCCCGCAGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1138699‑1138537 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCACGCTGGCGACTCGAACACGTCATCGGTCACTTCGATGCCGTTGGCCAGGTCCGG  >  NC_002947/1138626‑1138771                                                                                                                                                                                                                                                                                                                       GCGGAAAACCGCATGCACACGATCAAGGCGATCCTGGTATCGACCCTGGCTGATCTATAAGTAGCCCGCAGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATG                                                                                                                                                                 >  1:251970/1‑150     AAAACCGCATGCACACGATCAAGGCGATCCTGGTATCGACCCTGGCTGATCTATAAGTAGCCCGCAGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCG                                                                                                                                                             >  2:13974/1‑150       AACCGCATGCACACGATCAAGGCGATCCTGGTATCGACCCTGGCTGATCTATAAGTAGCCCGAAGTCCCGGGGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCT                                                                                                                                                           <  2:19570/150‑1          CGCATGCACACGATCAAGGCGATCCTGGTATCGACCCTGGCTGATCTATAAGTAGCCCGCAGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCC                                                                                                                                                        >  2:358903/1‑150                                                                                  AGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTT                                                                                >  2:101974/1‑150                                                                                         GTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCT                                                                                                   >  1:163978/1‑124                                                                                         GTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCT                                                                                                   <  2:163978/124‑1                                                                                             CCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCA                                                                                                                            >  2:511923/1‑95                                                                                             CCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCA                                                                                                                            <  1:511923/95‑1                                                                                                   AGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGG                                                               <  1:101974/150‑1                                                                                                                     CGATGATGTCAGGTCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCACGCTGGCGACT                                             >  1:135152/1‑150                                                                                                                                                      GCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCACGCTGGCGACTCGAACACGTCATCGGTCACTTCGATGCCGTTGG            >  2:9583/1‑150                                                                                                                                                       CCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCTCCTGCTCGAAGGCGATGCACGCTGGCGACTCGAACACGTCATCGGTCACTTCGATTCCGTTGGC           <  1:304099/150‑1                                                                                                                                                        CCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCACGCTGGCGACTCGAACACGTCATCGGTCACTTCGATGCCGTTGGCC          >  1:244131/1‑150                                                                                                                                                              CCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCACGCTGGCGACTCGAACACGTCATCGGTCACTTCGATGCCGTTGGCCAGGTCC    >  2:351159/1‑150                                                                                                                                                               CACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCACGCTGGCGACTCGAACACGTCATCGGTCACTTCGATGCCGTTGGCCAGGTCCG   <  2:244131/150‑1                                                                                                                                                                ACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCACGCTGGCGACTCGAACACGTCATCGGTCACTTCGATGCCGTTGGCCAGGTCCGG  <  1:545071/150‑1                                                                                                                                                                                                                                                                                                                       GCGGAAAACCGCATGCACACGATCAAGGCGATCCTGGTATCGACCCTGGCTGATCTATAAGTAGCCCGCAGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1138699‑1138537 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCACGCTGGCGACTCGAACACGTCATCGGTCACTTCGATGCCGTTGGCCAGGTCCGG  >  NC_002947/1138626‑1138771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.