| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1421592 | 15 (0.600) | 4 (0.170) | 4/252 | 2.7 | 21.4% | coding (166/1860 nt) | PP_1246 | hypothetical protein |
| ? | NC_002947 | = 1421617 | 15 (0.630) | coding (191/1860 nt) | PP_1246 | hypothetical protein | |||||
AAGAAAGACAACATCAAGGTCGAAGTGCCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1421511‑1421592‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgccAGCAGTTCCTGGTTATCCCAGGCCGGGCGGGTGATGGTCAGGTCGACCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGA < NC_002947/1421617‑1421471 AAGAAAGACAACATCAAGGTCGAAGTGCCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCAGCAGTTACTGGTTATCCCAGGCCGG > 1:561136/1‑108AAGAAAGACAACATCAAGGTCGAAGTGCCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATAACCCGCCAGCAGTTACTGGTTATCCCAGGCCGG < 2:561136/108‑1 TCAAGGTAGAAGTACCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCAGCAGTTCCTGGTTATCCCAGGCCGGGCGGGTG > 1:479377/1‑102 TCAAGGTAGAAGTACCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCAGCAGTTCCTGGTTATCCCAGGCCGGGCGGGTG < 2:479377/102‑1 GCCAGCAGTTCCTGGTTATCCCAGGCCGGGCGGGTGATGGTCAGGTCGACCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGA < 1:19258/150‑1 AAGAAAGACAACATCAAGGTCGAAGTGCCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1421511‑1421592‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgccAGCAGTTCCTGGTTATCCCAGGCCGGGCGGGTGATGGTCAGGTCGACCTGGGGCTTGCACCAGCTGGTGGCATCCCCGGGCACTTCGACCTTGATGTTGTCTTTCTTGGAAAAGGCCAGCTCGTGGGCGAACGCCTGCGGTACCAGA < NC_002947/1421617‑1421471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |