New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1421592	15 (0.600)	4 (0.170)	4/252	2.7	21.4%	coding (166/1860 nt)	PP_1246	hypothetical protein
	?	NC_002947	= 1421617	15 (0.630)					coding (191/1860 nt)	PP_1246	hypothetical protein

TCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGAAGTGCCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGTGAGCTGGAAGGCGGTCGATGCCAAGGGCAACCTGTACGCCAGCGGCTCGGGCAAT  >  NC_002947/1421471‑1421732                                                                                                                                                   |                                                                                                                    tCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGAAGTGCCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTggc                                                                                                                  <  1:19258‑M2/150‑4 (MQ=255)            aGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGAAGTGCCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGa                                                                                                       <  2:91103/150‑1 (MQ=255)                cttCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATAAAGCTACAAGTGCCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCaa                                                                                                   <  1:539868/149‑1 (MQ=255)                                               gaCAACATCAAGGTCGAAGTGCCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCg                                                                    >  1:557790/1‑150 (MQ=255)                                                              gAAGTGCCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGt                                                         >  1:294190/1‑146 (MQ=255)                                                              gAAGTGCCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGt                                                         <  2:294190/146‑1 (MQ=255)                                                                           aTGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGTGAGCTGGAAGGCGGTCg                                        >  1:303498/1‑150 (MQ=255)                                                                              ccaccaGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGTGAGCTGGAAGGCGGTCGATg                                     >  2:332197/1‑150 (MQ=255)                                                                                                 ccAGGTCGACCTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGTGAGCTGGAAGGCGGTCGATGCCAAGGGCAACCTGTAc                    >  1:299580/1‑148 (MQ=255)                                                                                                 ccAGGTCGACCTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGTGAGCTGGAAGGCGGTCGATGCCAAGGGCAACCTGTAc                    <  2:299580/148‑1 (MQ=255)                                                                                                          ccTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGTGAGCTGGAAGGCg                                            <  1:243836/115‑1 (MQ=255)                                                                                                          ccTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGTGAGCTGGAAGGCg                                            >  2:243836/1‑115 (MQ=255)                                                                                                                cATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGTGAGCTGGAAGGCGGTCGATGCCAAGGGCAACCTGTACGCCAGCGGCTCGGGCaa   >  2:567833/1‑150 (MQ=255)                                                                                                                 aTCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGTGAGCTGGAAGGCGGTCGATGCCAAGGGCAACCTGTACGCCAGCGGCTCGGGCAAt  >  1:527036/1‑150 (MQ=255)                                                                                                                   cACCCGCCCGGCCTGGGATAACCAGGAACTGCTggcgggtgatggtcaggtcgacctggggcttgcaccagctggtggcatccccgggtacttctaccttga                                                >  1:479377‑M2/1‑33 (MQ=255)                                                                                                                   cACCCGCCCGGCCTGGGATAACCAGGAACTGCTggcgggtgatggtcaggtcgacctggggcttgcaccagctggtggcatccccgggtacttctaccttga                                                <  2:479377‑M2/102‑70 (MQ=255)                                                                                                                          ccgGCCTGGGATAACCAGTAACTGCTggcgggttatggtcaggtcgacctggggcttgcaccagctggtggcatccccgggcacttcgaccttgatgttgtctttctt                                   <  2:561136‑M2/108‑83 (MQ=255)                                                                                                                          ccgGCCTGGGATAACCAGTAACTGCTggcgggtgatggtcaggtcgacctggggcttgcaccagctggtggcatccccgggcacttcgaccttgatgttgtctttctt                                   >  1:561136‑M2/1‑26 (MQ=255)                                                                                                                                  ggATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGTGAGCTGGaa                                                >  2:346971/1‑87 (MQ=255)                                                                                                                                  ggATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGTGAGCTGGaa                                                <  1:346971/87‑1 (MQ=255)                                                                                                                                                   |                                                                                                                    TCTGGTACCGCAGGCGTTCGCCCACGAGCTGGCCTTTTCCAAGAAAGACAACATCAAGGTCGAAGTGCCCGGGGATGCCACCAGCTGGTGCAAGCCCCAGGTCGACCTGACCATCACCCGCCCGGCCTGGGATAACCAGGAACTGCTGGCGGGCCTGCTGACCAAGCTGCCGTTCGTGTTCGCCAAGGACTGCTCGACCGCCAAGGTGAGCTGGAAGGCGGTCGATGCCAAGGGCAACCTGTACGCCAGCGGCTCGGGCAAT  >  NC_002947/1421471‑1421732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.