| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2271258 = | 24 (0.970) | 8 (0.370) | 7/232 | 1.7 | 29.0% | intergenic (+36/‑184) | PP_2002/PP_t31 | oxidoreductase/tRNA‑Val |
| ? | NC_002947 | 2271306 = | 18 (0.820) | intergenic (+84/‑136) | PP_2002/PP_t31 | oxidoreductase/tRNA‑Val | |||||
TTCGCTGAGGCCGCGAAATTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2271416‑2271258‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttaCCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTG > NC_002947/2271306‑2271392 TTCGCTGAGGCCGCGAAATTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGA > 1:457666/1‑150TTCGCTGAGGCCGCGAAATTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGA > 2:487871/1‑150 CGCTGAGGCCGCGAAATTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGC < 2:300401/150‑1 GCCGCGAAATTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTA > 1:296232/1‑150 GCCGCGAAATTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTA < 2:407802/150‑1 TTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑ACGGTTAATGTCCGAC‑TGTAGGAGCGGGTTTACCCGCGAA > 2:181914/1‑149 TTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑ACGGTTAATGTCCG‑ACTGTAGGAGCGGGTTTACCCGCGAA < 1:181914/149‑1 GTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGG > 1:271479/1‑114 GTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGG < 2:271479/114‑1 CCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTAT < 1:294020/111‑1 CCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTAT > 2:294020/1‑111 TACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGGCAATCACATCACGTTGCCTTTTTGAAAA < 1:248123/86‑1 TACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGGCAATCACATCACGTTGCCTTTTTGAAAA > 2:248123/1‑86 TACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTG < 1:548081/123‑1 TACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTG > 2:548081/1‑123 TTCGCTGAGGCCGCGAAATTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2271416‑2271258‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttaCCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTG > NC_002947/2271306‑2271392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |