New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2271258 =	24 (0.970)	8 (0.370)	7/232	1.7	29.0%	intergenic (+36/‑184)	PP_2002/PP_t31	oxidoreductase/tRNA‑Val
	?	NC_002947	2271306 =	18 (0.820)					intergenic (+84/‑136)	PP_2002/PP_t31	oxidoreductase/tRNA‑Val

GAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGC  >  NC_002947/2271112‑2271407                                                                                                                                                   |                                                                                                                                                        gAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTaaa                                                                                                                                                      >  1:443369/1‑150 (MQ=255)            ggCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATCGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTAc                                                                                                                                           <  2:276877/150‑1 (MQ=255)               cgtGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑c                                                                                                                                      >  1:494345/3‑150 (MQ=255)                        cTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGt                                                                                                                             >  2:213222/1‑150 (MQ=255)                                    aCGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTa                                                                                                                    <  2:418081/147‑1 (MQ=255)                                    aCGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTa                                                                                                                    >  1:418081/1‑147 (MQ=255)                                       ccAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCg                                                                                                              >  2:499320/1‑150 (MQ=255)                                                      cACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAag                                                                                               >  2:457666/1‑150 (MQ=255)                                                            caggtggcgaagctaagtcaatagccccattgaatttttttcaaaaaggcaacgtgatgtgattgcctgtgccggcctcttcgcggcTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTa                                                                                                                    <  1:548081‑M1/36‑1 (MQ=255)                                                            caggtggcgaagctaagtcaatagccccattgaatttttttcaaaaaggcaacgtgatgtgattgcctgtgccggcctcttcgcggcTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTa                                                                                                                    >  2:548081‑M1/88‑123 (MQ=255)                                                                         gTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGGTTACCCCCGAAGAGGCCGCCACAGGCAgtca                                                                            >  2:99409/1‑150 (MQ=255)                                                                           ccaTGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAatcaca                                                                          <  1:185822/148‑1 (MQ=255)                                                                            gATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAatcacat                                                                         <  2:164354/150‑1 (MQ=255)                                                                                atagccccattgaatttttttcaaaaaggcaacgtgatgtgattgcctgtgccggcctcttcgcgggTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCggg                                                                                                            <  1:294020‑M1/44‑1 (MQ=255)                                                                                atagccccattgaatttttttcaaaaaggcaacgtgatgtgattgcctgtgccggcctcttcgcgggTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCggg                                                                                                            >  2:294020‑M1/68‑111 (MQ=255)                                                                                  ggcATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGtt                                                                   >  1:487871/1‑150 (MQ=255)                                                                                          ccGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCttttt                                                           >  1:3415/1‑150 (MQ=255)                                                                                          ccGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGCTGCCttttt                                                           <  1:556884/150‑1 (MQ=255)                                                                                                 ttttcaaaaaggcaacgtgatgtgattgcctgcgccggcctcttcgcggcTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTa                                                                                                                    >  2:248123‑M1/51‑86 (MQ=255)                                                                                                 ttttcaaaaaggcaacgtgatgtgattgcctgcgccggcctcttcgcggcTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTa                                                                                                                    <  1:248123‑M1/36‑1 (MQ=255)                                                                                                       tataCCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCaa                                              <  1:213222/150‑1 (MQ=255)                                                                                                                   ccTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGa                                  >  2:296232/1‑150 (MQ=255)                                                                                                                     ttGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAatcacatca                                                                       >  2:455393/1‑111 (MQ=255)                                                                                                                     ttGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAatcacatca                                                                       <  1:455393/111‑1 (MQ=255)                                                                                                                                  gcCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGa                                                                                                                         >  2:438007/1‑48 (MQ=255)                                                                                                                                  gcCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGa                                                                                                                         <  1:438007/48‑1 (MQ=255)                                                                                                                                    cGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCttttt                                                           <  2:140578/108‑1 (MQ=255)                                                                                                                                    cGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCttttt                                                           >  1:140578/1‑108 (MQ=255)                                                                                                                                           ttcgcgggTAAACCCGCTCCTACAGT‑CGGACATTAACCGT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTaaa           <  1:181914‑M1/141‑1 (MQ=255)                                                                                                                                           ttcgcgggTAAACCCGCTCCTACA‑GTCGGACATTAACCGT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTaaa           >  2:181914‑M1/9‑149 (MQ=255)                                                                                                                                           ttCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCGTCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAAt          >  2:240647/1‑150 (MQ=255)                                                                                                                                              gcgTCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTc       <  1:499320/150‑1 (MQ=255)                                                                                                                                                   TAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGc  <  2:407802‑M1/150‑1 (MQ=255)                                                                                                                                                   TAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGc  >  1:296232‑M1/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                        GAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGC  >  NC_002947/2271112‑2271407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.