| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5415552 = | 16 (0.640) | 4 (0.170) | 4/256 | 2.8 | 21.9% | coding (273/1392 nt) | gabP‑V | gamma‑aminobutyrate permease |
| ? | NC_002947 | 5415582 = | 13 (0.540) | coding (243/1392 nt) | gabP‑V | gamma‑aminobutyrate permease | |||||
GGCAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5415702‑5415552‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGAAATTAT > NC_002947/5415582‑5415683 GGCAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCGCGGACTGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGGCGG > 1:353120/1‑150 GTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGC > 1:606443/1‑110 GTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGC < 2:606443/110‑1 GATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCC > 1:378550/1‑95 GATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCC < 2:378550/95‑1 ACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGAAATTAT < 1:57200/138‑1 ACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGAAATTAT > 2:57200/1‑138 GGCAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5415702‑5415552‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGAAATTAT > NC_002947/5415582‑5415683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |