| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5415552 = | 16 (0.640) | 4 (0.170) | 4/256 | 2.8 | 21.9% | coding (273/1392 nt) | gabP‑V | gamma‑aminobutyrate permease |
| ? | NC_002947 | 5415582 = | 13 (0.540) | coding (243/1392 nt) | gabP‑V | gamma‑aminobutyrate permease | |||||
CCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGAAATTATGGTTGCTGGGCCGGCTGCCGCGATGGCATGGCCAGAGC > NC_002947/5415444‑5415721 | ccAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGaaaa < 2:280622/150‑1 (MQ=255)ccAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGaaaa > 2:159286/1‑150 (MQ=255) ataatttcctatttcgtggccggtaccctggtggtactggtcatgcgcatgctcggcgaaatggccgtggcgcaccccgacaccggatcgttttccacctatGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGt < 1:57200‑M1/36‑1 (MQ=255) ataatttcctatttcgtggccggtaccctggtggtactggtcatgcgcatgctcggcgaaatggccgtggcgcaccccgacaccggatcgttttccacctatGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGt > 2:57200‑M1/103‑138 (MQ=255) gAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTg > 1:441704/1‑150 (MQ=255) cAGCACATGCCCGGCGGCGAATGTTTCGATGGTAATGAGCGGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGCGCTAGTCGGCAGAGCTTGAAAACGAGCCGGTGTCGTGGTGCGCCACGGCCAt > 2:353120/1‑150 (MQ=37) aTGCCCGGCGTCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGcc < 1:35248/150‑1 (MQ=255) ttCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAg > 1:445321/1‑150 (MQ=255) ggcgaaatggccgtggcgcaccccgacaccggatcgttttccacctatGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATc < 2:378550‑M1/47‑1 (MQ=255) ggcgaaatggccgtggcgcaccccgacaccggatcgttttccacctatGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATc > 1:378550‑M1/49‑95 (MQ=255) gAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTAccacca > 1:518330/1‑150 (MQ=255) aGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCg < 1:159286/150‑1 (MQ=255) caccaGTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAg > 2:266780/1‑150 (MQ=255) aGTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGaaa < 2:441704/150‑1 (MQ=255) gTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGAAAt > 1:421903/1‑150 (MQ=255) gatcgttttccacctatgccgaccaggccattggccgctgggccggcATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGcc > 1:378550‑M2/48‑95 (MQ=255) gatcgttttccacctatgccgaccaggccattggccgctgggccggcATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGcc < 2:378550‑M2/48‑1 (MQ=255) acctatgccgaccaggccattggccgctgggccggcATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGAAATTAt < 1:57200‑M2/102‑1 (MQ=255) acctatgccgaccaggccattggccgctgggccggcATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGAAATTAt > 2:57200‑M2/37‑138 (MQ=255) GCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTAc < 2:606443‑M1/110‑1 (MQ=255) GCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTAc > 1:606443‑M1/1‑110 (MQ=255) CCGCCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCAGTCCGCGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGAAATTATGGTTGCTGGGCCGGCTGcc > 1:353120‑M1/1‑150 (MQ=255) ccAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGAAATTATGGTTGCTGGGCCGGCTGCCGCGatggcatgg > 2:189070/1‑150 (MQ=255) ccTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGAAATTATGGTTGCTGGGCCGGCTGCCGCGATGGCATGGCCAGAGc > 1:234667/1‑150 (MQ=255) | CCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCGGCCAATGGCCTGGTCGGCATAGGTGGAAAACGATCCGGTGTCGGGGTGCGCCACGGCCATTTCGCCGAGCATGCGCATGACCAGTACCACCAGGGTACCGGCCACGAAATAGGAAATTATGGTTGCTGGGCCGGCTGCCGCGATGGCATGGCCAGAGC > NC_002947/5415444‑5415721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |