| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 513455 | 16 (0.640) | 4 (0.170) | 4/246 | 2.7 | 22.3% | intergenic (‑99/‑92) | crp/yhfA | DNA‑binding transcriptional dual regulator/hypothetical protein |
| ? | NC_002947 | = 513472 | 13 (0.560) | intergenic (‑116/‑75) | crp/yhfA | DNA‑binding transcriptional dual regulator/hypothetical protein | |||||
GTTCTTTATCTTGGCGGGTAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGG > NC_002947/513321‑513599 | gTTCTTTATCTTGGCGGGTAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCg > 2:392348/1‑150 (MQ=255) ttCTTTATCTTGGCGGGTAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGa < 2:160676/150‑1 (MQ=255) cTTTATCTTGGCGGGTAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑Ac < 1:561253/145‑1 (MQ=255) cTTTATCTTGGCGGGTAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑Ac > 2:561253/1‑145 (MQ=255) tCTTGGCGGGTAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTgtcggtttagtaccgaaacatct > 2:434594‑M1/1‑127 (MQ=255) ggTAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCttt < 1:142975/150‑1 (MQ=255) tAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTc < 1:407796/150‑1 (MQ=255) cGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTGTCGGTT‑TAGTACCGAAacatctcgtagtgtctgataa > 1:434594‑M2/1‑129 (MQ=255) gAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGc < 1:392348/150‑1 (MQ=255) aaCCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGcac > 1:46931/1‑150 (MQ=255) aaCCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGAAGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGATTTTCCCACAGCAGcac > 2:557319/1‑150 (MQ=255) gACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCgg < 1:25410/84‑1 (MQ=255) gACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCgg > 2:25410/1‑84 (MQ=255) gACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTTGAGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACACTTTTCCg > 1:540038/1‑150 (MQ=255) aCGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTGTCGGTT‑TAGTACCGAAacatctcgtagtgt < 1:350830‑M2/109‑15 (MQ=255) aCGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTGTCGGTT‑TAGTACCGAAacatctcgtagtgt > 2:350830‑M2/1‑95 (MQ=255) ttAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCg < 1:124019/150‑1 (MQ=255) gTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGa > 2:285518/1‑150 (MQ=255) ttGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGAt < 2:46931/150‑1 (MQ=255) tGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACacatctcgt > 2:138825‑M2/1‑69 (MQ=255) tGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACacatctcgt < 1:138825‑M2/78‑10 (MQ=255) ggCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGa < 1:285518/150‑1 (MQ=255) ttATCAGACACTACGAGATGTttcggtactaaaccgacacatctcgtagtgtctgataagctggcgccaaatgactggcgctctccgtcagccaacctctaaaaaagcctatgcgtcatatcgaacaggatttcgtgatggttgcctccg > 1:434594‑M1/1‑21 (MQ=255) acacTACGAGATGTttcggtactaaaccgacacatctcgtagtgtctgataagctggcgccaaatgactggcgctctccgtcagccaacctctaaaaaagcctatgcgt > 2:350830‑M1/1‑14 (MQ=255) acacTACGAGATGTttcggtactaaaccgacacatctcgtagtgtctgataagctggcgccaaatgactggcgctctccgtcagccaacctctaaaaaagcctatgcgt < 1:350830‑M1/109‑96 (MQ=255) aCGAGATGTgtcggtttagtaccgaaacatctcgtagtgtctgataagctggcgccaaatgactggcgctctccgtca > 2:138825‑M1/1‑9 (MQ=255) aCGAGATGTgtcggtttagtaccgaaacatctcgtagtgtctgataagctggcgccaaatgactggcgctctccgtca < 1:138825‑M1/78‑70 (MQ=255) agaTGTTTCGGTACTAA‑ACCGACacatctcgtagtgtctgataagctggcgccaaatgactggcgctctccgtcagccaacctctaaaaaagcctatgcgtcatatcgaacaggatttcgtgatggttgcctccgccctacccgccaaga > 2:434594‑M2/1‑23 (MQ=255) | GTTCTTTATCTTGGCGGGTAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGG > NC_002947/513321‑513599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |