New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 513455	16 (0.640)	4 (0.170)	4/246	2.7	22.3%	intergenic (‑99/‑92)	crp/yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
	?	NC_002947	= 513472	13 (0.560)					intergenic (‑116/‑75)	crp/yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein

GGTAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGT  >  NC_002947/513337‑513617                                                                                                                                         |                                                                                                                                                  ggTAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCttt                                                                                                                                     <  1:142975/150‑1 (MQ=255)   tAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTc                                                                                                                                   <  1:407796/150‑1 (MQ=255)        cGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTGTCGGTT‑TAGTACCGAAacatctcgtagtgtctgataa                                                                                                                              >  1:434594‑M2/1‑129 (MQ=255)          gAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGc                                                                                                                            <  1:392348/150‑1 (MQ=255)               aaCCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGcac                                                                                                                       >  1:46931/1‑150 (MQ=255)               aaCCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGAAGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGATTTTCCCACAGCAGcac                                                                                                                       >  2:557319/1‑150 (MQ=255)                                         gACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTTGAGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACACTTTTCCg                                                                                             >  1:540038/1‑150 (MQ=255)                                          aCGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTGTCGGTT‑TAGTACCGAAacatctcgtagtgt                                                                                                                                     <  1:350830‑M2/109‑15 (MQ=255)                                          aCGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTGTCGGTT‑TAGTACCGAAacatctcgtagtgt                                                                                                                                     >  2:350830‑M2/1‑95 (MQ=255)                                                        ttAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCg                                                                              <  1:124019/150‑1 (MQ=255)                                                              gTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGa                                                                        >  2:285518/1‑150 (MQ=255)                                                               ttGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGAt                                                                       <  2:46931/150‑1 (MQ=255)                                                                    tGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACacatctcgt                                                                                                                                          <  1:138825‑M2/78‑10 (MQ=255)                                                                    tGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACacatctcgt                                                                                                                                          >  2:138825‑M2/1‑69 (MQ=255)                                                                                          ggCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGa                                            <  1:285518/150‑1 (MQ=255)                                                                                                                  agaTGTTTCGGTACTAA‑ACCGACacatctcgtagtgtctgataagctggcgccaaatgactggcgctctccgtcagccaacctctaaaaaagcctatgcgtcatatcgaacaggatttcgtgatggttgcctccgccctacccgccaaga                    >  2:434594‑M2/1‑23 (MQ=255)                                                                                                                               cTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGTGAATCGGGGAGCGGCCATgtc       >  2:33081/1‑150 (MQ=255)                                                                                                                                     ccGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATGCATGGGGGCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTcgtcgt  >  2:399084/1‑150 (MQ=255)                                                                                                                                     ccGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTcgtcgt  >  1:148952/1‑150 (MQ=255)                                                                                                                                         |                                                                                                                                                  GGTAGGGCGGAGGCAACCATCACGAAATCCTGTTCGATATGACGCATAGGCTTTTTTAGAGGTTGGCTGACGGAGAGCGCCAGTCATTTGGCGCCAGCTTATCAGACACTACGAGATGTTTCGGTACTAA‑ACCGACACATCTCGTGCTTTTCCCACAGCCGCACAAGGTCTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGT  >  NC_002947/513337‑513617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.