New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2329471	24 (0.970)	7 (0.300)	5/250	2.4	23.8%	coding (1016/1239 nt)	PP_2047	3‑hydroxyacyl‑CoA dehydrogenase family protein
	?	NC_002947	= 2329476	22 (0.930)					coding (1021/1239 nt)	PP_2047	3‑hydroxyacyl‑CoA dehydrogenase family protein

ATGACCCGCAGGTCGACGCGTTGGTGCTGCAGGTGTCCCAGAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGCCCATGCGCTGGGCTGACGAACAAGGGGCGCCGTTTATCCTGGCCCGGCTGGAATACCTACAGGGCGTGCTTGGCGAGCATTGG  >  NC_002947/2329324‑2329619                                                                                                                                                     |                                                                                                                                                     aTGACCCGCAGGTCGACGCGTTGGTGCTGCAGGTGTCCCAGAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑Cca                                                                                                                                                    >  2:360419/1‑150 (MQ=255) aTGACCCGCAGGTCGACGCGTTGGTGCTGCAGGTGTCCCAGAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑Cca                                                                                                                                                    <  1:123702/150‑1 (MQ=255)      ccGCAGGTCGACGCGTTGGTGCTGCAGGTGTCCCAGAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAgc                                                                                                                                               <  2:617527‑M2/150‑3 (MQ=255)         cAGGTCGACGCGTTGGTGCTGCAGGTGTCCCAGAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAgcggc                                                                                                                                            >  2:514391‑M2/1‑145 (MQ=255)         cAGGTCGACGCGTTGGTGCTGCAGGTGTCCCAGAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAgcggc                                                                                                                                            >  1:617527‑M2/1‑145 (MQ=255)           ggTCGACGCGTTGGTGCTGCAGGTGTCCCAGAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAgcggcga                                                                                                                                          >  1:360419‑M2/1‑143 (MQ=255)                    gTTGGTGCTGCAGGTGTCCCAGAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCa                                                                                                                                 >  1:572747/1‑150 (MQ=255)                         tgctgcAGGTGTCCCAGAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCt                                                                                                                            <  2:41779/150‑1 (MQ=255)                                 gtggCCCAGAACCTTGGCTACCGACGTCCGAGACTCAGTTTTGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAAGGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑Ctgctggcggcgataccttcctggagaaccttcgc                                                                                                                    <  2:209736‑M1/150‑35 (MQ=255)                                      ccAGAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTGTCGCCG‑CTGCTGgcggcgataccttcctgga                                                                                                                              >  1:284822‑M2/1‑116 (MQ=255)                                      ccAGAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTGTCGCCG‑CT‑GCTggcggcgataccttcctgga                                                                                                                             <  2:284822‑M2/135‑21 (MQ=255)                                         gAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATgg                                                                                                            <  1:543599/150‑1 (MQ=255)                                                   tACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCt                                                                                                  <  1:370994/150‑1 (MQ=255)                                                                                aaTCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGCCCATGCGCTGGGCTGa                                                                     <  1:393804/150‑1 (MQ=255)                                                                                         aCGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGt                                                                                                                              >  1:215627/1‑84 (MQ=255)                                                                                         aCGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGt                                                                                                                              <  2:215627/84‑1 (MQ=255)                                                                                           gTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCt                                                                                                  >  1:472970/1‑110 (MQ=255)                                                                                           gTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCt                                                                                                  <  2:472970/110‑1 (MQ=255)                                                                                               ccTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCTACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGCCCATGCGCTGGGCTGACGAACAAgg                                                            >  2:403217/1‑144 (MQ=255)                                                                                               ccTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCTACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGCCCATGCGCTGGGCTGACGAACAAgg                                                            <  1:403217/144‑1 (MQ=255)                                                                                                 tgctgGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGCCCATGCGCTGGGCTGACGAACAAGGGGCGCCGt                                                    >  2:266483/1‑150 (MQ=255)                                                                                                            gTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑Ctgctggcggcga                                                                                                                                          <  2:401691‑M1/53‑13 (MQ=255)                                                                                                            gTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑Ctgctggcggcga                                                                                                                                          <  2:401587‑M1/53‑13 (MQ=255)                                                                                                            gTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑Ctgctggcggcga                                                                                                                                          >  1:401691‑M1/1‑41 (MQ=255)                                                                                                            gTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑Ctgctggcggcga                                                                                                                                          >  1:401587‑M1/1‑41 (MQ=255)                                                                                                             tCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGCCCATGCGCTGGGCTGACGAACAAGGGGCGCCGTTTATCCTGGccc                                        >  2:268219/1‑150 (MQ=255)                                                                                                               aaCGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGc                                                                                     <  1:429355/103‑1 (MQ=255)                                                                                                               aaCGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGc                                                                                     >  2:429355/1‑103 (MQ=255)                                                                                                                aCGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGCCCATGCGCTGGGCTGACGAACAAGGGGCGCCGTTTATCCTGGCCCGGc                                     >  2:501408/1‑150 (MQ=255)                                                                                                                  gAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGCCCATGCGCTGGGCTGACGAACAAGGGGCGCCGTTTATCCTGGCCCGGCTg                                   <  1:501408/150‑1 (MQ=255)                                                                                                                      gggCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGTCTTCCCGGCTGCCACTGGCGGGCCCATGCGCTGGGCTGACGAACAAGGGGCGCCGTTTATCCTGGCCCGGCTGGAAt                               <  1:266483/150‑1 (MQ=255)                                                                                                                        gCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAgcggcgataccttcctggagaaccttcgccccttccttgaccagtgccagcaggcaacgttcgaggatttcctcaaaactgagtctcggacgtcggtagccaaggttctgggccac                             <  2:209736‑M2/150‑117 (MQ=255)                                                                                                                        gCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGc                                                                                                <  1:510353/83‑1 (MQ=255)                                                                                                                        gCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGc                                                                                                >  2:510353/1‑83 (MQ=255)                                                                                                                                  tcCAGGAAGGTATCGCCGCCagcagcggcgacaccttcctggagaaccttcgccccttcgttgaccagtgccagcaggcaacgttcgaggatttcctcggcactgatgccccgacgtcggtagccaaggttctgg                                   <  2:284822‑M1/135‑116 (MQ=255)                                                                                                                                  tcCAGGAAGGTATCGCCG‑Ccagcagcggcgacaccttcctggagaaccttcgccccttcgttgaccagtgccagcaggcaacgttcgaggatttcctcggcactgatgccccgacgtcggtagccaaggttctgg                                  >  1:284822‑M1/1‑19 (MQ=255)                                                                                                                                    cAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGCCCATGCGCTGGGCTGACGAACAAGGGGCGCCGTTTATCCTGGCCCGGCTg                                   >  1:500658/1‑132 (MQ=255)                                                                                                                                    cAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGCCCATGCGCTGGGCTGACGAACAAGGGGCGCCGTTTATCCTGGCCCGGCTg                                   <  2:500658/132‑1 (MQ=255)                                                                                                                                              tCGCCG‑Ctgctggcggcgataccttcctggagaaccttcgccccttcgttgaccagtgccagcaggcaacgttcgaggatttcctcggcactgatgccccgacgtcggtagccaaggttctgggacacctgcagcaccaacgcgtcgacc       >  1:360419‑M1/1‑7 (MQ=255)                                                                                                                                              tCGCCG‑CCAGCAgcggcgataccttcctggagaaccttcgccccttcgttgac                                                                                                        >  1:401691‑M2/1‑12 (MQ=255)                                                                                                                                              tCGCCG‑CCAGCAgcggcgataccttcctggagaaccttcgccccttcgttgac                                                                                                        <  2:401691‑M2/53‑42 (MQ=255)                                                                                                                                              tCGCCG‑CCAGCAgcggcgataccttcctggagaaccttcgccccttcgttgac                                                                                                        <  2:401587‑M2/53‑42 (MQ=255)                                                                                                                                              tCGCCG‑CCAGCAgcggcgataccttcctggagaaccttcgccccttcgttgac                                                                                                        >  1:401587‑M2/1‑12 (MQ=255)                                                                                                                                                gccg‑ctgctggcggcgataccttcctggagaaccttcgccccttcgttgaccagtgccagcaggcaacgttcgaggatttcctcggcactgatgccccgacgtcggtagccaaggttctgggacacctgcagcaccaacgcgtcgacctg     >  2:514391‑M1/1‑5 (MQ=255)                                                                                                                                                gccg‑ctgctggcggcgataccttcctggagaaccttcgccccttcgttgaccagtgccagcaggcaacgttcgaggatttcctcggcactgatgccccgacgtcggtagccaaggttctgggacacctgcagcaccaacgcgtcgacctg     >  1:617527‑M1/1‑5 (MQ=255)                                                                                                                                                   g‑ctgctggcggcgataccttcctggagaaccttcgccccttcgttgaccagtgccagcaggcaacgttcgaggatttcctcggcactgatgccccgacgtcggtagccaaggttctgggacacctgcagcaccaacgcgtcgacctgcgg  <  2:617527‑M1/150‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ATGACCCGCAGGTCGACGCGTTGGTGCTGCAGGTGTCCCAGAACCTTGGCTACCGACGTCGGGGCATCAGTGCCGAGGAAATCCTCGAACGTTGCCTGCTGGCACTGGTCAACGAAGGGGCGAAGGTTCTCCAGGAAGGTATCGCCG‑CCAGCAGCGGCGACATCGACCAGGTCTGGCTCCACGGCTATGGCTTCCCGGCTGCCACTGGCGGGCCCATGCGCTGGGCTGACGAACAAGGGGCGCCGTTTATCCTGGCCCGGCTGGAATACCTACAGGGCGTGCTTGGCGAGCATTGG  >  NC_002947/2329324‑2329619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.