| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4726014 = | 27 (1.090) | 6 (0.250) | 6/250 | 2.1 | 21.6% | intergenic (‑136/+100) | PP_4183/brnQ | membrane protein/branched‑chain amino acid transporter |
| ? | NC_002947 | 4726042 = | 18 (0.760) | intergenic (‑164/+72) | PP_4183/brnQ | membrane protein/branched‑chain amino acid transporter | |||||
TGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGC > NC_002947/4725869‑4726158 | tGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTACCGGATAGGGCCCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGccc > 1:423502/1‑150 (MQ=255) tcggtggtgaccctggtgggtgccgtggcctgcgaccgcatgctcggcaagccgcgcgaggcgctggcctgaccggacaagtggaagcctgagggcggcaccggccacaagccgaagggtgcccgccaagggtgaaaacaagagAGcccc > 1:273741‑M1/145‑150 (MQ=255) gAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGcccc < 1:348659/150‑1 (MQ=255) tCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATc < 2:423502/150‑1 (MQ=255) ggTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGga > 2:96666/1‑150 (MQ=255) tACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGAc > 1:56847/1‑150 (MQ=255) aaaGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGc > 1:242061/1‑150 (MQ=255) aaGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGct < 2:242061/150‑1 (MQ=255) ggCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGctctc < 1:429815/150‑1 (MQ=255) cttAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCg > 2:628013/3‑127 (MQ=255) cttAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCg < 1:628013/125‑1 (MQ=255) cTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTc > 1:576884/1‑125 (MQ=255) cTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTc < 2:576884/125‑1 (MQ=255) aCCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCAc > 2:159314/1‑150 (MQ=255) gATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAACGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCtt < 1:96666/150‑1 (MQ=255) aTTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTc < 1:404266/150‑1 (MQ=255) ttCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACgggg > 1:29637/1‑115 (MQ=255) ttCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACgggg < 2:29637/115‑1 (MQ=255) aCGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAAACGGGGCTCTCTTGTTACGATTCGTGACGGGCACCCTTCGGCTtg > 1:159851/1‑150 (MQ=255) gCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGtt < 1:626157/119‑1 (MQ=255) gCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGtt > 2:626157/1‑119 (MQ=255) gcctgaccggacaagtggaagcctgagggcggcaccggccacaagccgaagggtgcccgccaagggtgaaaacaagagAGCCCCGCATCCTTTCGGAGACGGGGctctc < 1:346944‑M1/31‑1 (MQ=255) gcctgaccggacaagtggaagcctgagggcggcaccggccacaagccgaagggtgcccgccaagggtgaaaacaagagAGCCCCGCATCCTTTCGGAGACGGGGctctc > 2:346944‑M1/79‑109 (MQ=255) aGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTg < 2:56847/150‑1 (MQ=255) aaGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTc > 2:374095/1‑150 (MQ=255) tGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGc < 1:135783/150‑1 (MQ=255) aagccgaagggtgcccgccaagggtgaaaacaagagAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTgg > 1:406425‑M1/37‑83 (MQ=255) aagccgaagggtgcccgccaagggtgaaaacaagagAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTgg < 2:406425‑M1/47‑1 (MQ=255) gctgcGAAGCGGCCGAAACAGGCAAAATACAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTcg > 1:16270/1‑150 (MQ=255) ccgaagggtgcccgccaagggtgaaaacaagagAGCCCCGTCTCCGAAAGGATGCGGGGCTTTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAg > 2:190200‑M1/34‑137 (MQ=255) ccgaagggtgcccgccaagggtgaaaacaagagAGCCCCGTCTCCGAAAGGATGCGGGGCTTTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAg < 1:190200‑M1/104‑1 (MQ=255) aGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCCCCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGc > 1:113108/1‑150 (MQ=255) gCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCgg > 1:463309/1‑150 (MQ=255) cAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGc < 1:374095/150‑1 (MQ=255) | TGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGC > NC_002947/4725869‑4726158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |