| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4726014 = | 27 (1.090) | 6 (0.250) | 6/250 | 2.1 | 21.6% | intergenic (‑136/+100) | PP_4183/brnQ | membrane protein/branched‑chain amino acid transporter |
| ? | NC_002947 | 4726042 = | 18 (0.760) | intergenic (‑164/+72) | PP_4183/brnQ | membrane protein/branched‑chain amino acid transporter | |||||
GGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGA > NC_002947/4725895‑4726185 | ggCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGctctc < 1:429815/150‑1 (MQ=255) aCCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCAc > 2:159314/1‑150 (MQ=255) gATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAACGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCtt < 1:96666/150‑1 (MQ=255) aTTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTc < 1:404266/150‑1 (MQ=255) aCGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAAACGGGGCTCTCTTGTTACGATTCGTGACGGGCACCCTTCGGCTtg > 1:159851/1‑150 (MQ=255) gCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGtt > 2:626157/1‑119 (MQ=255) gCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGtt < 1:626157/119‑1 (MQ=255) gcctgaccggacaagtggaagcctgagggcggcaccggccacaagccgaagggtgcccgccaagggtgaaaacaagagAGCCCCGCATCCTTTCGGAGACGGGGctctc < 1:346944‑M1/31‑1 (MQ=255) gcctgaccggacaagtggaagcctgagggcggcaccggccacaagccgaagggtgcccgccaagggtgaaaacaagagAGCCCCGCATCCTTTCGGAGACGGGGctctc > 2:346944‑M1/79‑109 (MQ=255) ctgaccggacaagtggaagcctgagggcggcaccggccacaagccgaagggtgcccgccaagggtgaaaacaagaaagccccgcatcctttcggagacggggctCTCTTGTTTTCACCCTTGGCGGGCACCCTTCgg < 1:190200‑M2/33‑1 (MQ=255) ctgaccggacaagtggaagcctgagggcggcaccggccacaagccgaagggtgcccgccaagggtgaaaacaagaaagccccgcatcctttcggagacggggctCTCTTGTTTTCACCCTTGGCGGGCACCCTTCgg > 2:190200‑M2/105‑137 (MQ=255) aGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTg < 2:56847/150‑1 (MQ=255) aaGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTc > 2:374095/1‑150 (MQ=255) tGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGc < 1:135783/150‑1 (MQ=255) aagccgaagggtgcccgccaagggtgaaaacaagagAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTgg > 1:406425‑M1/37‑83 (MQ=255) aagccgaagggtgcccgccaagggtgaaaacaagagAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTgg < 2:406425‑M1/47‑1 (MQ=255) gctgcGAAGCGGCCGAAACAGGCAAAATACAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTcg > 1:16270/1‑150 (MQ=255) ccgaagggtgcccgccaagggtgaaaacaagagAGCCCCGTCTCCGAAAGGATGCGGGGCTTTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAg < 1:190200‑M1/104‑1 (MQ=255) ccgaagggtgcccgccaagggtgaaaacaagagAGCCCCGTCTCCGAAAGGATGCGGGGCTTTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAg > 2:190200‑M1/34‑137 (MQ=255) ccaagggtgaaaacaagagagccccgtctccgaaaggatgcggggctCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCtt > 1:406425‑M2/48‑83 (MQ=255) ccaagggtgaaaacaagagagccccgtctccgaaaggatgcggggctCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCtt < 2:406425‑M2/36‑1 (MQ=255) aGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCCCCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGc > 1:113108/1‑150 (MQ=255) gCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCgg > 1:463309/1‑150 (MQ=255) cAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGc < 1:374095/150‑1 (MQ=255) gagagccccgtctccgaaaggatgcggggctCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGc > 2:346944‑M2/32‑109 (MQ=255) gagagccccgtctccgaaaggatgcggggctCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGc < 1:346944‑M2/78‑1 (MQ=255) CCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCAc > 1:51724‑M1/1‑88 (MQ=255) CCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCAc < 2:51724‑M1/88‑1 (MQ=255) CCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCAcc > 1:116959‑M1/1‑150 (MQ=255) tCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGc > 2:279645/1‑122 (MQ=255) tCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGc < 1:279645/122‑1 (MQ=255) tttCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTc > 2:271620/1‑127 (MQ=255) tttCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTc < 1:271620/127‑1 (MQ=255) ggggctCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGa > 1:273741‑M2/7‑150 (MQ=255) | GGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGA > NC_002947/4725895‑4726185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |