| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 336209 = | 27 (0.360) | 6 (0.100) | 5/200 | NT | 22.5% | intergenic (+54/+339) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 336329 = | 20 (0.340) | intergenic (+174/+219) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein | |||||
CAGGTCCCAAATGCCACTTGTGCATAAACATTTCTTGTGGTTAGCGCAAGCGGCTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/336383‑336209‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgacgcaaggccgctcccacaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCAA > NC_002947/336329‑336472 CAGGTCCAAAATGCCACTTGTGCATAAACATTTCTTGTGGTTAGCGCAAGCGGCTTTTGGCGGCGCGGCAATGAAGGTGGAAAGGGCCGCAAAGCGGGCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATT < 1:704995/150‑1 TGCCACTTGTGCATAAACATTTCTTGTGGTTAGCGCAAGCGGCTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTCGCGACGCAAG < 2:1407136/150‑1 TTGTGCATAAACATTTCTTGTGGTTAGCGCAAGCGGCTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCT < 2:1314215/150‑1 ATTTCTTGTGGTTAGCGCAAGCGGCTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTC > 1:1599329/1‑122 ATTTCTTGTGGTTAGCGCAAGCGGCTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTC < 2:1599329/122‑1 CGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGA < 1:1615974/139‑1 CGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGA > 2:1615974/1‑139 AAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGA < 1:1030697/135‑1 AAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGA > 2:1030697/1‑135 AGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAACTGTTT < 2:472358/97‑1 AGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTT > 1:472358/1‑97 CTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCA > 1:1851461/1‑38 CTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCA < 2:1851461/38‑1 TTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAG < 1:1802648/150‑1 GCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCG > 1:1515658/1‑150 CGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGGCTTTGCGCAAACGCCTGTTTTTACTTGTCTCCACCCGC > 2:7668/1‑150 TCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGT > 1:661928/1‑49 TCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGT < 2:661928/49‑1 CCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCA > 1:458814/1‑150 CACAAAAGCCGCTTGAGCTAACCACAAGAAATGTTTACGCACAAGTGGCAGTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCTGCAAGAAGGAATAAGCGAA > 2:706097/1‑150 ACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAATGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTA < 1:1179313/117‑1 ACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTA > 2:1179313/1‑117 AAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTT > 2:1533854/1‑48 AAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTT < 1:1533854/48‑1 CAGGTCCCAAATGCCACTTGTGCATAAACATTTCTTGTGGTTAGCGCAAGCGGCTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/336383‑336209‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgacgcaaggccgctcccacaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCAA > NC_002947/336329‑336472 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |