| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 336209 = | 27 (0.360) | 6 (0.100) | 5/200 | NT | 22.5% | intergenic (+54/+339) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 336329 = | 20 (0.340) | intergenic (+174/+219) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein | |||||
ATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGC > NC_002947/336065‑336334 | ttcgcttattccttcttgcagctgcagcccagtaaaaacaggcgtttgcgcaaagaccagcggcgtagcgatccggcatgcctttcgctcaggtcccaactgccacttgtgcgtaaacatttcttgtggttagctcaagcggctTTtgtg > 2:706097‑M1/145‑150 (MQ=255) tggcttattcctgcttgcggctgcagcccagtaaaaacaggcgtttgcgcaaagaccagcggcgtagcgatccggcatgcctttcgctcaggtcccaaatgccacttgtgcataaacatttcttgtggttagcgcaagcggctTTTGTgg > 1:458814‑M1/144‑150 (MQ=255) gcgggtggagacaagtaaaaacaggcgtttgcgcaaagcccagcggcgtagcgatccggcatgcctttcgctcaggtcccaaatgccacttgtgcataaacatttcttgtggttagcgcaagcggctTTTGTGGGAGCGGCCTTGCGTcg > 2:7668‑M1/128‑150 (MQ=255) gAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTcgc < 1:918656/150‑1 (MQ=255) cggctgcagcccagtaaaaacaggcgtttgcgcaaagaccagcggcgtagcgatccggcatgcctttcgctcaggtcccaaatgccacttgtgcataaacatttcttgtggttagcgcaagcggctTTTGTGGGAGCGGCCTTGCGTcgc > 1:1515658‑M1/127‑150 (MQ=255) ctgcagcccagtaaaaacaggcgtttgcgcaaagaccagcggcgtagcgatccggcatgcctttcgctcaggtcccaaatgccacttgtgcataaacatttcttgtggttagcgcaagcggctTTTGTGGGAGCGGCCTTGCGTCGCGaa < 1:1802648‑M1/27‑1 (MQ=255) cGATATGGAGGACGATCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATg < 1:113302/150‑1 (MQ=255) taaaaacaggcgtttgcgcaaagaccagcggcgtagcgatccggcatgcctttcgctcaggtcccaaatgccacttgtgcataaacatttcttgtggttagcgcaagcggctTTtgt > 2:1179313‑M1/113‑117 (MQ=255) taaaaacaggcgtttgcgcaaagaccagcggcgtagcgatccggcatgcatttcgctcaggtcccaaatgccacttgtgcataaacatttcttgtggttagcgcaagcggctTTtgt < 1:1179313‑M1/5‑1 (MQ=255) gacgacCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACAGGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAag < 1:1273499/150‑1 (MQ=255) cgacCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAagca < 2:138779/150‑1 (MQ=255) cgacCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAagca < 1:818593/150‑1 (MQ=255) cccATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAagcagc < 2:1660483/149‑1 (MQ=255) acCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAagcagc < 2:665722/150‑1 (MQ=255) acCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAagcagc < 2:291089/150‑1 (MQ=255) cATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGccc > 1:1883876/1‑150 (MQ=255) aTAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGcccc > 2:1802648/1‑150 (MQ=255) gggggCAGCCGATTACCTGTGGGACATGTCCAAGTCGCTGATGAACGCTATCGAGATCGCCAACGGCCCTTCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCa < 1:34166/150‑1 (MQ=38) gggggCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCa < 1:1443222/150‑1 (MQ=255) gggggCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCa < 2:195953/150‑1 (MQ=255) gggCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCatg < 1:1006383/150‑3 (MQ=255) aTTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGTGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCa > 1:322686/1‑139 (MQ=255) aTTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGTGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCa < 2:322686/139‑1 (MQ=255) tgCGACATGGCCATGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCTCATTAGGCATTGATGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACgg < 2:1033481/150‑1 (MQ=255) gCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACggg < 2:92571/150‑1 (MQ=255) ggCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACgggg > 2:474979/1‑144 (MQ=255) ggCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACgggg < 1:474979/144‑1 (MQ=255) aGGGGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGTGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGGGATTGCGCTGAAAACGGGGGCCGCTTTGCg < 2:1115933/150‑1 (MQ=255) gaACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTcgc < 2:1748902/150‑1 (MQ=255) tcccaaatgccacttgtgcataaacatttcttgtggttagcgcaagcggctTTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCg > 2:1615974‑M1/52‑139 (MQ=255) tcccaaatgccacttgtgcataaacatttcttgtggttagcgcaagcggctTTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCg < 1:1615974‑M1/88‑1 (MQ=255) tcccaaatgccacttgtgcataaacatttcttgtggttagcgcaagcggctTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCtt > 2:1030697‑M1/52‑135 (MQ=255) tcccaaatgccacttgtgcataaacatttcttgtggttagcgcaagcggctTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCtt < 1:1030697‑M1/84‑1 (MQ=255) aaatgccacttgtgcataaacatttcttgtggttagcgcaagcggctt > 2:1533854‑M1/48‑48 (MQ=255) aaatgccacttgtgcataaacatttcttgtggttagcgcaagcggctt < 1:1533854‑M1/1‑1 (MQ=255) acttgtgcataaacatttcttgtggttagcgcaagcggctTTTGTGGGa > 1:661928‑M1/41‑49 (MQ=255) acttgtgcataaacatttcttgtggttagcgcaagcggctTTTGTGGGa < 2:661928‑M1/9‑1 (MQ=255) aatagCCAAGGGTAAGGCGCATTAGGCATTGATGCGGTAATTTGTGGGAGCGTCCTTGCGTCGCGAATGGGCTGAAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGTTTTGCGGCCCTTTAGCGACGCAAGGCCg < 2:888629/146‑1 (MQ=255) aaacatttcttgtggttagcgcaagcggctTTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCt > 1:472358‑M1/31‑97 (MQ=255) aaacagttcttgtggttagcgcaagcggctTTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCt < 2:472358‑M1/67‑1 (MQ=255) tAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGGTTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCCCaaaaa > 1:491853/1‑149 (MQ=255) gcgcATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCCCAAAAGCCGc > 1:285822/1‑150 (MQ=255) cgcgGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGc < 2:1462771/111‑1 (MQ=255) cgcgGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGc > 1:1462771/1‑111 (MQ=255) | ATCAAGCACCTGGTGCGCGAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGC > NC_002947/336065‑336334 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |