| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 336209 = | 27 (0.360) | 6 (0.100) | 5/200 | NT | 22.5% | intergenic (+54/+339) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 336329 = | 20 (0.340) | intergenic (+174/+219) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein | |||||
TAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCAAGCGCTT > NC_002947/336181‑336478 | tAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGGTTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCCCaaaaa > 1:491853/1‑149 (MQ=255) gcgcATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCCCAAAAGCCGc > 1:285822/1‑150 (MQ=255) AGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACaa < 2:1314215‑M1/150‑1 (MQ=255) ccTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGAGAAATGAAACTTCCCTGTGGCGAGTTTGTTCGTAGGAAAGCCGCCGGCGCTAACCACAAGAAATGTTTATGCACAAGTGGc > 2:1653695/1‑150 (MQ=255) CTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCa < 2:1407136‑M1/150‑1 (MQ=255) GAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAAt > 1:1599329‑M1/1‑122 (MQ=255) GAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAAt < 2:1599329‑M1/122‑1 (MQ=255) AATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGCCCGCTTTGCGGCCCTTTCCACCTTCATTGCCGCGCCGCCAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTTGGACCTg < 1:704995‑M1/150‑1 (MQ=255) cTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAACAGCCGCTTGCGTTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGaa > 1:117216/1‑150 (MQ=255) cTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGaa > 1:1630511/1‑150 (MQ=255) cTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGaa > 2:1181925/1‑150 (MQ=255) tGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGaaa > 1:1431115/1‑150 (MQ=255) cgcaaagcggcccccgttttcagcgcaatctctgaaatcgccggggctgctttgcagcccattcgcgacgcaaggccgctcccacaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGa < 1:1615974‑M2/51‑1 (MQ=255) cgcaaagcggcccccgttttcagcgcaatctctgaaatcgccggggctgctttgcagcccattcgcgacgcaaggccgctcccacaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGa > 2:1615974‑M2/89‑139 (MQ=255) cAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAgg > 1:1742829/1‑150 (MQ=255) aagcggcccccgttttcagcgcaatctctgaaatcgccggggctgctttgcagccctttcgcgacgcaaggccgctcccacaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGa > 2:1030697‑M2/85‑135 (MQ=255) aagcggcccccgttttcagcgcaatctctgaaatcgccggggctgctttgcagccctttcgcgacgcaaggccgctcccacaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGa < 1:1030697‑M2/51‑1 (MQ=255) cagcCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGc < 1:1407136/150‑1 (MQ=255) ccGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGAt > 1:1436368/1‑150 (MQ=255) cGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGTATTTGGGACCTGAGCGAAAGGCATGCCGGATc > 2:137492/1‑150 (MQ=255) cGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATc > 2:971231/1‑150 (MQ=255) aTTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTAc < 2:1436368/150‑1 (MQ=255) agcgcaatctctgaaatcgccggggctgctttgcagcccattcgcgacgcaaggccgctcccacaaaAGCCGCTTGCGCTAACCACAAGAACTGttt < 2:472358‑M2/30‑1 (MQ=255) agcgcaatctctgaaatcgccggggctgctttgcagcccattcgcgacgcaaggccgctcccacaaaAGCCGCTTGCGCTAACCACAAGAAATGttt > 1:472358‑M2/68‑97 (MQ=255) tGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCt < 1:971231/150‑1 (MQ=255) gcTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTg < 2:1431115/150‑1 (MQ=255) cTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTgc > 1:977959/1‑150 (MQ=255) tGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCt > 1:1472429/1‑132 (MQ=255) tGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCt < 2:1472429/132‑1 (MQ=255) gAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTgcgc < 1:1314215/150‑1 (MQ=255) tttGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGTATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTa < 1:137492/150‑1 (MQ=255) ggCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTggg > 1:1559246/1‑150 (MQ=255) cccTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCt > 2:1757398/1‑150 (MQ=255) ttcgcgacgcaaggccgctcccacaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAg < 1:1802648‑M2/123‑1 (MQ=255) gcgacgcaaggccgctcccacaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCg > 1:1515658‑M2/25‑150 (MQ=255) cgacgcaaggccgctcccacaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGGCTTTGCGCAAACGCCTGTTTTTACTTGTCTCCACCCGc > 2:7668‑M2/24‑150 (MQ=255) tcccacaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGt < 2:661928‑M2/40‑1 (MQ=255) tcccacaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGt > 1:661928‑M2/10‑49 (MQ=255) ccacaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCa > 1:458814‑M2/8‑150 (MQ=255) cacaaaAGCCGCTTGAGCTAACCACAAGAAATGTTTACGCACAAGTGGCAGTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCTGCAAGAAGGAATAAGCGaa > 2:706097‑M2/7‑150 (MQ=255) acaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAATGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTa < 1:1179313‑M2/112‑1 (MQ=255) acaaaAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTa > 2:1179313‑M2/6‑117 (MQ=255) aAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCAttt > 2:1533854‑M2/2‑48 (MQ=255) aAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCAttt < 1:1533854‑M2/47‑1 (MQ=255) aGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCCGCCGCAAGCAGGAATAAGCCAAGCGCtt > 1:1630740/1‑150 (MQ=255) | TAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCAAGCGCTT > NC_002947/336181‑336478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |