| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 688878 = | 83 (1.110) | 5 (0.070) | 4/244 | NT | 5.8% | intergenic (+371/‑80) | PP_5446/PP_0590 | hypothetical protein/ArsR family transcriptional regulator |
| ? | NC_002947 | 688908 = | 83 (1.160) | intergenic (+401/‑50) | PP_5446/PP_0590 | hypothetical protein/ArsR family transcriptional regulator | |||||
CCACAACATGGCACTGCGCTTGGGGTCGGCCATCAGGCTGGCAATTTGGCTGATACTGCTGGCTGCGTTCATGTCCTTATAACTCCCTGCAAGTTCACGGTGGGGATGCGATGGCCAACCCTGCCAGGGAAGCGCCTCTCGCTGGCA‑‑‑‑‑CTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/689029‑688878‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACG > NC_002947/688908‑689052 CCACAACATGGCACTGCGCTTGGGGTCGGCCATCAGGCTGGCAATTTGGCTGATACTGCTGGCTGCGTTCATGTCCTTATAACTCCCTGCAAGTTCACGGTGGGGATGCGATGGCCAACCCTGCCAGGGAAGCGCCTCTCGCTGGCA‑‑‑‑‑CTG > 1:767147/1‑150 CACAACATGGCACTGCGCTTGGGGTCGGCCATCAGGCTGGCAATTTGGCTGATACTGCTGGCTGCGTTCATGTCCTTATAACTCCCTGCAAGTTCACGGTGGGGATGCGATGGCCAACCCTGCCAGGGAAGCGCCTCTCGCTGGCA‑‑‑‑‑CTGG > 2:1847402/1‑150 ACAACATGGCACTGCGCTTGGGGTCGGCCATCAGGCTGGCAATTTGGCTGATACTGCTGGCTGCGTTCATGTCCTTATAACTCCCTGCAAGTTCACGGTGGGGATGCGATGGCCAACCCTGCCAGGGAAGCGCCTCTCGCTGGCA‑‑‑‑‑CTGGC > 2:374160/1‑150 CAACCCTGCCAGGGAAGCGCCTCTCGCTGGCA‑‑‑‑‑CTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCC > 1:1218131/1‑150 CCTGCCAGGGAAGCGCCTCTCGCTGGCA‑‑‑‑‑CTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAAC > 1:1681240/1‑89 CCTGCCAGGGAAGCGCCTCTCGCTGGCA‑‑‑‑‑CTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAAC < 2:1681240/89‑1 CTGCCAGGGAAGCGCCTCTCGCTGGCACTGGCCTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCC > 2:195389/1‑150 CTGCCAGGGAAGCGCCTCTCGCTGGCACTGGCCTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCC > 2:460773/1‑150 CTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACG > 2:826705/1‑150 CTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGG < 1:1346015/141‑1 CTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGG > 2:1346015/1‑141 CCACAACATGGCACTGCGCTTGGGGTCGGCCATCAGGCTGGCAATTTGGCTGATACTGCTGGCTGCGTTCATGTCCTTATAACTCCCTGCAAGTTCACGGTGGGGATGCGATGGCCAACCCTGCCAGGGAAGCGCCTCTCGCTGGCA‑‑‑‑‑CTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/689029‑688878‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACG > NC_002947/688908‑689052 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |