| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 871173 = | 77 (1.030) | 7 (0.110) | 7/224 | NT | 10.6% | intergenic (+18/+57) | PP_0753/PP_0754 | lipoprotein/hypothetical protein |
| ? | NC_002947 | 871208 = | 50 (0.760) | intergenic (+53/+22) | PP_0753/PP_0754 | lipoprotein/hypothetical protein | |||||
GTGGCTGGTCTACTGTGCGCTTGGCGGACATGTGCATGAGGACTTGCCCGAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGTCACTCAGGCAGCGGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/871335‑871173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcagcgggttttTTGTTGTCTGGCCGGTACAGATCTACGCCGCTTCTATGTGGAAATCCAGCAAGCTGAACCCAGTGCCGGCATCCACTTCGGGCAAGTCCTCATGCACATGTCCGCCAAGCGCACAGTAGACCAGCCACTGGCGGTCCTGCACGTTGATG > NC_002947/871208‑871356 GTGGCTGGTCTACTGTGAGCTTGGCGGACATGTGCATGAGGACTTGCCCGAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGTCACTCA > 1:907775/1‑150 TGGCTGGTCTACTGTGCGCTTGGCGGACATGTGCATGAGGACTTGCCCGAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGTCACTCAG < 2:286876/150‑1 GTCTACTGTGCGCTTGGCGGACATGTGCATGAGGACTTGCCCGAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGTCACTCAGGCAGCG > 2:1514845/1‑150 TCTACTGTGCGCTTGGCGGACATGTGCATGAGGACTTGCCCGAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACACAGAAGCGGCCTAGATCTGTACCGGCCAGACAACAAACAACCCGCTGCCTGTCACTCAGGCAGCGG < 1:63640/150‑1 CTACTGTGCGCTTGGCGGACATGTGCATGAGGACTTGCCCGAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGTCACTCAGGCAGCGGG < 1:632283/150‑1 TTGGCGGACATGTGCATGAGGACTTGCCCGAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGTCACTCAGGCAGC < 1:1285455/136‑1 TTGGCGGACATGTGCATGAGGACTTGCCCGAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGTCACTCAGGCAGC > 2:1285455/1‑136 CCGAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGAGTGACAGGCAGCGGGTTTTTTGTTGT < 2:324077/123‑1 CCGAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGAGTGACAGGCAGCGGGTTTTTTGTTGT > 1:324077/1‑123 GAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGTCACTCA < 1:138470/101‑1 GAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGTCACTCA > 2:138470/1‑101 GAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGAGTGACAGGCAGCGGGTTTTTTGTTGTCTGG > 1:1511367/1‑125 GAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGAGTGACAGGCAGCGGGTTTTTTGTTGTCTGG < 2:1511367/125‑1 GTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGTCACTCAGGCAGC < 1:127228/104‑1 GTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGTCACTCAGGCAGC > 2:127228/1‑104 CCGCTGCCTGTCACTCAGGCAGCGGGTTTTTTGTTGTCTGGCCGGTACAGATCTACGCCGCTTCTATGTGGAAATCCAGCAAGCTGAACCCAGTGCCGGCATCCACTTCGGGCAAGTCCTCATGCACATGTCCGCCAAGCGCACAGTAGA > 2:952004/1‑150 GTCACTCAGGCAGCGGGTTTTTTGTTGTCTGGCCGGTACAGATCTACGCCGCTTCTATGTGGAAATCCAGCAAGCTGAACCCAGTGCCGGCATCCACTTCGGGCAAGTCCTCATGCACATGTCCGCCAAGCGCACAGTAGACCA > 1:1000147/1‑144 GTCACTCAGGCAGCGGGTTTTTTGTTGTCTGGCCGGTACAGATCGACGCCGCTTCTATGTGGAAATCCAGCAAGCTGAACCCAGTGCCGGCATCCACTTCGGGCAAGTCCTCATGCACATGTCCGCCAAGCGCACAGTAGACCA < 2:1000147/144‑1 AGGCAGCGGGTTTTTTGTTGTCTGGCCGGTACAGATCTACGCCGCTTCTATGTGGAAATCCAGCAAGCTGAACCCAGTGCCGGCATCCACTTCGGGCAAGT < 2:1885240/101‑1 AGGCAGCGGGTTTTTTGTTGTCTGGCCGGTACAGATCTACGCCGCTTCTATGTGGAAATCCAGCAAGCTGAACCCAGTGCCGGCATCCACTTCGGGCAAGT > 1:1885240/1‑101 GCAGCGGGTTTTTTGTTGTCTGGCCGGTACAGATCTACGCCGCTTCTATTTGGAAATCCAGCAAGCTGAACCCAGTGCCGGCATCCACTTCGGGCAAGTCCTCATGCACATGTCCGCCAAGCGCACAGTAGACCAGCCACTGGCGGTCCT > 2:1215135/1‑150 TTTTGTTGTCTGGCCGGTACAGATCTACGCCGCTTCTATGTGGAAATCCAGCAAGCTGAACCCAGTGCCGGCATCCACTTCGGGCAAGTCCTCATGCACATGTCCGCCAAGCGCACAGTAGACCAGCCACTGGCGGTCCTGCACGTTGAT < 2:200544/150‑1 TTTTGTTGTCTGGCCGGTACAGATCTACGCCGCTTCTATGTGGAAATCCAGCAAGCTGAACCCAGTGCCGGCATCCACTTCGGGCAAGTCCTCATGCACATGTCCGCCAAGCGCACAGTAGACCAGCCACTGGCGGTCCTGCACGTTGAT < 1:334467/150‑1 TTTTGTTGTCGCGCCGGTACAGATCTACGCCGCTTCTATGTGGAAATCCAGCAAGCTGAACCCAGTGCCGGCATCCACTTCGGGCAAGTCCTCATGCACATGTCCGCCAAGCGCACAGTAGACCAGCCACTGGCGGTCCTGCACGTTGAT < 2:813958/150‑1 TTTNTTGTCTGGCCGGTACAGATCTACGCCGCTTCTATGTGGAAATCCAGCAAGCTGAACCCAGTGCCGGCATCCACTTCGGGCAAGTCCTCATGCACATGTCCGCCAAGCGCACAGTAGACCAGCCACTGGCGGTCCTGCACGTTGATG > 2:1195527/1‑150 GTGGCTGGTCTACTGTGCGCTTGGCGGACATGTGCATGAGGACTTGCCCGAAGTGGATGCCGGCACTGGGTTCAGCTTGCTGGATTTCCACATAGAAGCGGCGTAGATCTGTACCGGCCAGACAACAAAAAACCCGCTGCCTGTCACTCAGGCAGCGGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/871335‑871173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcagcgggttttTTGTTGTCTGGCCGGTACAGATCTACGCCGCTTCTATGTGGAAATCCAGCAAGCTGAACCCAGTGCCGGCATCCACTTCGGGCAAGTCCTCATGCACATGTCCGCCAAGCGCACAGTAGACCAGCCACTGGCGGTCCTGCACGTTGATG > NC_002947/871208‑871356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |