New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 898173	57 (0.760)	7 (0.100)	6/238	NT	9.8%	coding (54/336 nt)	PP_0781	hypothetical protein
	?	NC_002947	= 4798980	75 (1.070)					coding (33/486 nt)	PP_4226	hypothetical protein

CTGAACTTCGCCGAGCATGCCGGAAACGAAGTCGCATTTTCCTACAACTGACTCAGAAACCTCCGATCCGAATCCATGATGGGATTTCCCCCTGCACACGTTGTCAGGGAGACACCTCATGTACCTGGATTACCTCGTGCCCTCCTGGCACGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/898020‑898173 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcacgagGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGGGTCGGTTGTAGGAAAATGCGACTTCGTTTCTGTTGTGTTCGAGAAGCTCGGGAATTGGGGTTGAGGCT  <  NC_002947/4798980‑4798832                                                                                                                                                                                                                                                                                                                 CTGAACTTCGCCGAGCATGCCGGAAACGAAGTCGCATTTTCCTACAACTGACTCAGAAACCTCCGATCCGAATCCATGATGGGATTTCCCCCTGCACACGTTGTCAGGGAGACACCTCATGTACCTGGATTACCTCGTGCCCTCCTGGCA                                                                                                                                                           <  2:660477/150‑1  TGAACTTCGCCGAGCATGCCGGAAACGAAGTCGCATTTTCCTACAACTGACTCAGAAACCTCCGATCCGAATCCATGATGGGATTTCCCCCTGCACACGTTGTCAGGGAGACACCTCATGTACCTGGATTACCTCGTGCCCTCCTGGCAC                                                                                                                                                          <  1:191066/150‑1    AACTTCGCCGAGCATGCCGGAAACGAAGTCGCATTTTCCTACAACTGACTCAGAAACCTCCGATCCGAATCCATGGTGGGATTTCCCCCTGCACACGTTGTCAGGGAGACACCTCATGTACCTGGATTACCTCGTGCCCTCCTGGCACGA                                                                                                                                                        <  2:58879/150‑1    AACTTCGCCGAGCATGCCGGAAACGAAGTCGCATTTTCCTACAACTGACTCAGAAACCTCCGATCCGAATCCATGATGGGATTTCCCCCTGCACACGTTGTCAGGGAGACACCTCATGTACCTGGATTACCTCGTGCCCTCCTGGCACGA                                                                                                                                                        <  1:1686023/150‑1                                                                                                       GTCAGGGAGACACCTCATGTACCTGGATTACCTCGTGCCCTCCTGGCACG                                                                                                                                                         >  1:431497/1‑50                                                                                                       GTCAGGGAGACACCTCATGTACCTGGATTACCTCGTGCCCTCCTGGCACG                                                                                                                                                         <  2:431497/50‑1                                                                                                                  ACCTCATGTACCTGGATTACCTCGTGCCCTCCTGTCACGAGGTAATCCAGGTACATTAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGAATTCGGATCAGAGGTTTCTGGGTTGGCTGTAGGCAAATGCGACTTCGTT                                          >  2:1840197/1‑150                                                                                                                                  TTACCTCGTGCCCTCCTGGCACGAGGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCAT                                                                                                <  1:1781301/80‑1                                                                                                                                  TTACCTCGTGCCCTCCTGGCACGAGGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCAT                                                                                                >  2:1781301/1‑80                                                                                                                                      CTCGTGCCCTCCTGGCACGAGGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGGGTCGGTTGTAGGAAAATGCGACTTCGTTTCTGTT                                    <  1:1759443/136‑1                                                                                                                                      CTCGTGCCCTCCTGGCACGAGGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGGGTCGGTTGTAGGAAAATGCGACTTCGTTTCTGTT                                    >  2:1759443/1‑136                                                                                                                                      CTCGTGCCCTCCTGGCACGAGGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGG                                                                      <  1:575390/102‑1                                                                                                                                      CTCGTGCCCTCCTGGCACGAGGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGG                                                                      >  2:575390/1‑102                                                                                                                                                    GCACGAGGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGGGTCGGTTGTAGGAAAATGCGACTTCGTTTCTGCTGTGTTCGAGAAGCTCGGGAATTGGGGTT        <  2:35301/150‑1                                                                                                                                                     CACGAGGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGGGTCGGTTGTAGGAAAATGCGACTTCGTTTCTGTTGTGTTCGAGAAGCTCGGGAATTGGGGTTG       >  2:250230/1‑150                                                                                                                                                      ACGAGGTAATCCAGGTACATGAGGTGTCTCCCTGAGAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGGGTCGGTTGTAGGAAAATGCGACTTCGTTTCTGTAGTGTTCGAGAAGCTCGGGAATTGGGGTTGA      >  2:1019002/1‑150                                                                                                                                                      ACGAGGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGGGTCGGTTGTAGGAAAATGCGACTTCGTTTCTGTTGTGTTCGAGAAGCTCGGGAATTGGGGTTGA      <  1:1509900/150‑1                                                                                                                                                      ACGAGGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGGGTCGGTTGTAGGAAAATGCGACTTCGTTTCTGTTGTGTTCGAGAAGCTCGGGAATTGGGGTTGA      <  1:642332/150‑1                                                                                                                                                        tAGGTAGTCCAGGGACATGTGGGGTCGCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGGGTCGGTTGTAGGAAAATGCGACTTCGTTTCTGTTGTGTTCGAGAAGCTCGGGAATTGGGGTTGAGG    <  2:869788/149‑1                                                                                                                                                        GAGGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGGGTCGGTTGTAGGAAAATGCGACTTCGTTTCTGTTGTGTTCGAGAAGCTCGGGAATTGGGGTTGAGG    >  1:371016/1‑150                                                                                                                                                          GGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGGGTCGGTTGTAGGAAAATGCGACTTCGTTTCTGTTGTGTTCGAGAAGCTCGGGAATTGGGGTTGAGGCT  >  1:288330/1‑150                                                                                                                                                                                                                                                                                                                 CTGAACTTCGCCGAGCATGCCGGAAACGAAGTCGCATTTTCCTACAACTGACTCAGAAACCTCCGATCCGAATCCATGATGGGATTTCCCCCTGCACACGTTGTCAGGGAGACACCTCATGTACCTGGATTACCTCGTGCCCTCCTGGCACGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/898020‑898173 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcacgagGTAATCCAGGTACATGAGGTGTCTCCCTGACAACGTGTGCAGGGGGAAATCCCATCATGGATTCGGATCAGAGGTTTCTGGGTCGGTTGTAGGAAAATGCGACTTCGTTTCTGTTGTGTTCGAGAAGCTCGGGAATTGGGGTTGAGGCT  <  NC_002947/4798980‑4798832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.