| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1262403 | 74 (0.990) | 6 (0.080) | 6/246 | NT | 7.2% | coding (238/1116 nt) | PP_1104 | AotO‑related protein |
| ? | NC_002947 | = 1262413 | 82 (1.140) | coding (228/1116 nt) | PP_1104 | AotO‑related protein | |||||
GCCGCTTTGCAGTTCAAAACGCCCCAATGGTGCATCCAGCAGCACTTGCTCC‑AA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1262350‑1262403‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cc‑aaCCCGGTGGGTTTGGAGCAAGTGCTGCTGGATGCACCATTGGGGCGTTTTGAACTGCAAAGCGGCGAGAACTTCAATCGCAACTTCGTCGACCTGTCGGACAGCATCGGCGACCAGATCGAAGAACACCTTACCCAGGACCCGACGC < NC_002947/1262413‑1262268 GCCGCTTTGCAGTTCAAAACGCCCCAATGGTGCATCCAGCAGCACTTGCTCC‑AACCCGGTGGGTTTGGAGCAA < 1:1523831/73‑1GCCGCTTTGCAGTTCAAAACGCCCCAATGGTGCATCCAGCAGCACTTGCTCC‑AACCCGGTGGGTTTGGAGCAA > 2:1523831/1‑73 TTCAAAACGCCCCAATGGTGCATCCAGCAGCACTTGCTCCAAACCCGGTGGGTTTG < 1:1837105/56‑1 TTCAAAACGCCCCAATGGTGCATCCAGCAGCACTTGCTCCAAACCCGGTGGGTTTG > 2:1837105/1‑56 GCAGCACTTGCTCCAAACCCACCGGG‑TTGGAGCAAGTGCTGCTGGATGCACCATTGGGGCGTTTTGAACTGCAAAGCGGCGAGAACTTCAATCGCAAC > 1:1200120/1‑98 GCAGCACTTGCTCC‑AAACCCACCGGGTTGGAGCAAGTGCTGCTGGATGCACCATTGGGGCGTTTTGAACTGCAAAGCGGCGAGAACTTCAATCGCAAC < 2:1200120/98‑1 TGCTCC‑AACCCGGTGGGTTTGGAGCAAGTGCTGCTGGATGCACCATTGGGGCGTTTTGAACTGCAAAGCGGCGAGAACTTCAATCGCAACTTCGTCGACCTGTCGGACAGCATCGGCGACCAGATCGAAGAACACCTGACCCAGGACCag > 1:566280/1‑148 CC‑AACCCGGTGGGTTTGGAGCAAGTGCTGCTGGATGCACCATTGGGGCGTTTTGAACTGCAAAGCGGCGAGAACTTCAATCGCAACTTCGTCGACCTGTCGGACAGCATCGGCGACCAGATCGAAGAACACCTTACCCAGGACCCGACGC < 2:1404429/150‑1 GCCGCTTTGCAGTTCAAAACGCCCCAATGGTGCATCCAGCAGCACTTGCTCC‑AA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1262350‑1262403‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cc‑aaCCCGGTGGGTTTGGAGCAAGTGCTGCTGGATGCACCATTGGGGCGTTTTGAACTGCAAAGCGGCGAGAACTTCAATCGCAACTTCGTCGACCTGTCGGACAGCATCGGCGACCAGATCGAAGAACACCTTACCCAGGACCCGACGC < NC_002947/1262413‑1262268 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |