| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1639493 | 71 (0.950) | 4 (0.060) | 4/234 | NT | 5.2% | intergenic (‑41/‑270) | czcR‑III/PP_1439 | response regulator/hypothetical protein |
| ? | NC_002947 | = 1639502 | 80 (1.160) | intergenic (‑50/‑261) | czcR‑III/PP_1439 | response regulator/hypothetical protein | |||||
CCAGGTGCAGGCCGTCGGTGCCTGTGTGGGCGCAGTCGACCACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTCTTGACCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1639335‑1639493‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgaccctgATGTCACTACAGGGTCAAGAATCGTCCCCTTTCAACATACCGAGCCCCCCATGCGCCTACTGATCATCGAGGACGAGCTGCGTACCGCCGACTACCTGCAACAGGGCCTTCGCGAGAACGGTTACGTGGTCGACTGCGCCCA < NC_002947/1639502‑1639361 CCAGGTGCAGGCCGTCGGTGCCTGTGTGGGCGCAGTCGACCACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTC < 1:1083158/150‑1 CAGGTGCAGGCCGTCGGTGCCTGTGTGGGCGCAGTCGACCACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTCT < 1:465188/150‑1 AGGTGCAGGCCGTCGGTGCCTGTGTGGGCGCAGTCGACCACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTCTT > 2:905903/1‑150 GTGCAGGCCGTCGGTGCCTGTGTGGGCGTAGTCGACCACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGAGCACGGGGGGCTCGGTATGTTGAAAGGGGACGATTCTTGA < 1:627239/150‑1 GTGCAGGCCGTCGGTGCCTGTGTGGGCGCAGTCGACCACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTCCGTTGAAAGGGGACGATTCTTGA > 2:617908/1‑150 GTGCAGGCCGTCGGTGCCTGTGTGGGCGCAGTCGACCACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTCTTGA < 1:303715/150‑1 GTGCAGGCCGTCGGTGCCTGTGTGGGCGCAGTCGACCACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTCTTGA < 1:304294/150‑1 GTGCAGGCCGTCGGTGCCTGTGTGGGCGCAGTCGACCACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTC > 1:257322/1‑146 GTGCAGGCCGTCGGTGCCTGTGTGGGCGCAGTCGACCACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTC < 2:257322/146‑1 GCAGGCCGTCGGTGCCTGTGTGGGCGCAGTCGACCACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTCTTGACC > 1:965529/1‑150 ACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTCTT < 1:1068748/111‑1 ACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTCTT > 2:1068748/1‑111 TCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTCTTGACCCTGATGTCACTACAGGGTCAA < 1:148661/79‑1 TCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTCTTGACCCTGATGTCACTACAGGGTCAA > 2:148661/1‑79 GGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGAATCGTCCCCTTTCAACATACCGAGCCCCCCATGCGCCTACTGATCATCGAGGACGAGCTGCGTACCGCCGACTACCTGCAACAGGGC > 1:1562846/1‑125 GGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGAATCGTCCCCTTTCAACATACCGAGCCCCCCATGCGCCTACTGATCATCGAGGACGAGCTGCGTACCGCCGACTACCTGCAACAGGGC < 2:1562846/125‑1 TTGACCCTGATGTCACTACAGGGTCAAGAATCGTCCCCTTTCAACATACCGAGCCCCCCATGCGCCTACTGATCATCGAGGACGAGCTGCGTACCGCCGACTACCTGCAACAGGGCCTTCGCGAGAACGGTTACGTGGTCGACTGCGCCC > 1:1716925/1‑150 TGACCCTGATGTCACTACAGGGTCAAGAATCGTCCCCTTTCAACATACCGAGCCCCCCATGCGCCTACTGATCATCGAGGACGAGCTGCGTACCGCCGACTACCTGCAACAGGGCCTTCGCGAGAACGGTTACGTGGTCGACTGCGCCCA > 1:902085/1‑150 TGATGTCACTACAGGGTCAAGAATCGTCCCCTTTCAACATACCGAGCCCCCCATGCGCCTACTGATCATCGAGGACGAGCTGCGTACCGCCGACTACCTGCAACAGGGCCTTCGCGAGAACGGTTACGTGG < 2:796895/131‑1 TGATGTCACTACAGGGTCAAGAATCGTCCCCTTTCAACATACCGAGCCCCCCATGCGCCTACTGATCATCGAGGACGAGCTGCGTACCGCCGACTACCTGCAACAGGGCCTTCGCGAGAACGGTTACGTGG > 1:796895/1‑131 CCAGGTGCAGGCCGTCGGTGCCTGTGTGGGCGCAGTCGACCACGTAACCGTTCTCGCGAAGGCCCTGTTGCAGGTAGTCGGCGGTACGCAGCTCGTCCTCGATGATCAGTAGGCGCATGGGGGGCTCGGTATGTTGAAAGGGGACGATTCTTGACCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1639335‑1639493‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgaccctgATGTCACTACAGGGTCAAGAATCGTCCCCTTTCAACATACCGAGCCCCCCATGCGCCTACTGATCATCGAGGACGAGCTGCGTACCGCCGACTACCTGCAACAGGGCCTTCGCGAGAACGGTTACGTGGTCGACTGCGCCCA < NC_002947/1639502‑1639361 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |