| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1811479 | 76 (1.020) | 7 (0.110) | 5/208 | NT | 9.8% | intergenic (+44/+84) | ispD/PP_1615 | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator |
| ? | NC_002947 | = 1811513 | 67 (1.100) | intergenic (+78/+50) | ispD/PP_1615 | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator | |||||
AGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1811312‑1811479‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTATGTTG < NC_002947/1811513‑1811369 AGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGC < 2:74714/150‑1 GCCGCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCG < 2:725043/150‑1 CCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGG < 1:485625/150‑1 CCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGG < 1:1228358/150‑1 CCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGG < 1:303145/150‑1 CCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGG < 1:277203/150‑1 CCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGG > 1:682224/1‑150 GCCATCGAATGGTCCGGTCAGGGGCCGCGGCTGGTGAACGGGCGCGGTGACAATATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCCGCGCTGGGCGCGTCAACGCTGAGCGTTCTCCTGGGCTGGCCTTGTCGCGGGTAAA < 2:879914/150‑1 CATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACC > 2:333962/1‑150 ATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGAGAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGAGAAACCC > 2:978220/1‑150 ATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCC > 2:541471/1‑150 AATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTC < 1:1584523/150‑1 GGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTA < 1:541471/150‑1 GGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCAGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCATTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTA > 2:1175777/1‑150 GTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTAC > 1:1232590/1‑150 TGGAAGGGTGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCT > 1:1531298/1‑122 TGGAAGGGTGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCT < 2:1531298/122‑1 TGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGG < 2:1097127/111‑1 TGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGG > 1:1097127/1‑111 AGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTAC > 2:378308/1‑123 AGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTAC < 1:378308/123‑1 aAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGG < 1:1675825/149‑1 TAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGG < 2:641591/150‑1 TAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTCGGCGGGTGAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGG < 2:1398655/150‑1 CCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGTGGGTTTACCCGC > 1:176161/1‑150 AGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGTGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGC < 2:176161/150‑1 GCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTAC < 2:1782162/114‑1 GCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTAC > 1:1782162/1‑114 TTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGC > 2:1631967/1‑150 TTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCCCAGCGTTTACCCGCCCAGCGCCGGCGCAACCATTCGAGCTCTTCGGGC > 2:682224/1‑150 GCGGGTAAACCCGCTCCTACGACGGTCTGTGTCGAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGG < 2:1343599/150‑1 GCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGG > 1:1895529/1‑150 GCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGG < 1:1161539/150‑1 GCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGG > 1:1753287/1‑150 GCGGGGAAACCCGGTCCTCCGCCGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGG < 2:905054/150‑1 GGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTC < 2:814941/132‑1 GGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTC > 1:814941/1‑132 GGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGC < 2:861027/96‑1 GGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGC > 1:861027/1‑96 CCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTA < 1:995757/150‑1 CCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTA > 1:333962/1‑150 CGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTAT > 1:1155587/1‑150 cCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTATG < 2:1915710/149‑1 GCTCCTACGACGGTCTGTGTCCAACCACCTATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAgag > 1:1297229/1‑65 GCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCT < 2:201883/129‑1 GCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCT < 2:1155309/129‑1 GCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCT > 1:201883/1‑129 GCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCT > 1:1155309/1‑129 GCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTAGAGATCTTCGGGCCGGGTCACCTTTATG < 1:1697325/150‑1 GCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGACCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTATG < 2:1505694/150‑1 GCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGC < 2:1691007/62‑1 GCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGC > 1:1691007/1‑62 CTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTATGT < 2:1030438/150‑1 CCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTGCCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCACTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTATGTTG < 1:92694/150‑1 AGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1811312‑1811479‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTATGTTG < NC_002947/1811513‑1811369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |