| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2302335 = | 78 (1.050) | 6 (0.080) | 6/242 | NT | 7.7% | coding (606/654 nt) | PP_5497 | rhs repeat‑associated core domain‑containing protein |
| ? | NC_002947 | 2302364 = | 70 (0.990) | coding (635/654 nt) | PP_5497 | rhs repeat‑associated core domain‑containing protein | |||||
TCTTCGCATCACAGCCAAATCGCCGGGCCATGTTGCGGCCCTCTGCGACCGGTCCGGCAAGGCAGCTCCCACAATGAACCGAACCGCAAACCCTTGATGATCGTGCTTAAAACCATTCTGCTTTACGCAGCCGTGAAGCCGACTGAGCGGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2302489‑2302335‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcGTAAAGCAGAATGGTTTTAAGCACGATCATCAAGGGTTTGCGGTTCGGTTCATTGTGGGAGCTGCCTTGCCGGACCGGTCGCAGAGGGCCGCAACATGGCCCGGCGATTTGGCTGTGATGCGAAGACCCTGGGGGCGCTTCGCACC > NC_002947/2302364‑2302509 TCTTCGCATCACAGCCAAATCGCCGGGCCATGTTGCGGCCCTCTGCGACCGGTCCGGCAAGGCAGCTCCCACAATGAACCGAACCGCAAACCCTTGATGATCGTGCTTAAAACCATTCTGCTTTACGCAGCCGTGAAGCCGACTGAGCGG < 1:120549/150‑1TCTTCGCATCACAGCCAAATCGCCGGGCCATGTTGCGGCCCTCTGCGACCGGTCCGGCAAGGCAGCTCCCACAATGAACCGAACCGCAAACCCTTGATGATCGTGCTTAAAACCATTCTGCTTTACGCAGCCGTGAAGCCGACTGAGCGG > 2:120549/1‑150 CTTCGCATCACAGCCAAATCGCCGGGCCATGTTGCGGCCCTCTGCGACCGGTCCGGCAAGGCAGCTCCCACACTATTCCGAACCGCAAACCCTTGATGATCGTGCTTAAAACCATTCTGCTTTACGCAGCCGTGAAGCCGACTGAGCGGG < 1:126094/150‑1 CTTCGCATCACAGCCAAATCGCCGGGCCATGTTGCGGCCCTCTGCGACCGGTCCGGCAAGGCAGCTCCCACAATGAACCGAACCGCAAACCCTTGATGATCGTGCTTAAAACCATTCTGCTTTACGCAGCCGTGAAGCCGACTGAGCGGG < 1:852285/150‑1 TTCGCATCACAGCCAAATCGCCGGGCCATGTTGCGGCCCTCTGCGACCGGTCCGGCAAGGCAGCTCCCACAATGAACCGAACCGCAAACCCTTGATGATCGTGCTTAAAACCATTCTGCTTTACGCAGCCGTGAAGCCGACTGAGCGGGC > 2:701356/1‑150 TTTACGCAGCCGTGAAGCCGACTGAGCGGGCTGCGTAAAGCAGAATGGTTTTAAGCACGATCATCAAGGGTTTGCGGTTCGGTTCATTGTGGGAGCTGCCTTGCCGGACC < 1:1485110/110‑1 TTTACGCAGCCGTGAAGCCGACTGAGCGGGCTGCGTAAAGCAGAATGGTTTTAAGCACGATCATCAAGGGTTTGCGGTTCGGTTCATTGTGGGAGCTGCCTTGCCGGACC > 2:1485110/1‑110 ACGCAGCCGTGAAGCCGACTGAGCGGGCTGCGTAAAGCAGAATGGTTTTAAGCACGATCATCAAGGGTTTGCGGTTCGGTTCATTGTGGGAGCTGCCTTGCCGGACCGGTCGCAGAGTGCCGCAACATGGCCCGGCGATTTGGCTGTGAT > 1:548055/1‑150 GCAGCCGTGAAGCCGACTGAGCGGGCTGCGTAAAGCAGAATGGTTTTAAGCACGATCATCAAGGGTTTGCGGTTCGGTTCATTGTGGGAGCTGCCTTGCCGGACCGGTCGCAGAGGGCCGCAACATGGCCCGGCGATTTGGCTGTGATGC > 1:1198634/1‑150 AGCCGTGAAGCCGACTGAGCGGGCTGCGTAAAGCAGAATGGTTTTAAGCACGATCATCAAGGGTTTGC > 1:1356710/1‑68 AGCCGTGAAGCCGACTGAGCGGGCTGCGTAAAGCAGAATGGTTTTAAGCACGATCATCAAGGGTTTGC < 2:1356710/68‑1 GGCTGCGTAAAGCAGAATGGTTTTACGCAGAGGCATCAAGGGTTTGCGGTTCGGTTCATTGTGGGAGCTGCCTTGCCGGACCGGTCGCAGAGGGCCGCAACATGGCCCGGCGATTTGGCTGTGATGCGAAGACCCTGGGGGCGCTTCGCA > 1:989044/1‑150 CTGCGTAAAGCAGAATGGTTTTAAGCACGATCATCAAGGGTTTGCGGTTCGGTTCATTGTGGGAGCTGCCTTGCCGGACCGGTCGCAGAGGGCCGCAACATGGCCCGGCGATTTGGCTGTGATGCGAAGACCCTGGGGGCGCTTCGCACC > 1:219586/1‑150 CTGCGTAAAGCAGAATGGTTTTAAGCACGATCATCAAGGGTTTGCGGTTCGGTTCATTGTGGGAGCTGCCTTGCCGGACCGGTCGCAGAGGGCCGCAACATGGCCCGGCGATTTGGCTGTGATGCGAAGACCCTGGGGGCGCTT < 1:1444143/144‑1 CTGCGTAAAGCAGAATGGTTTTAAGCACGATCATCAAGGGTTTGCGGTTCGGTTCATTGTGGGAGCTGCCTTGCCGGACCGGTCGCAGAGGGCCGCAACATGGCCCGGCGATTTGGCTGTGATGCGAAGACCCTGGGGGCGCTT > 2:1444143/1‑144 TCTTCGCATCACAGCCAAATCGCCGGGCCATGTTGCGGCCCTCTGCGACCGGTCCGGCAAGGCAGCTCCCACAATGAACCGAACCGCAAACCCTTGATGATCGTGCTTAAAACCATTCTGCTTTACGCAGCCGTGAAGCCGACTGAGCGGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2302489‑2302335‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcGTAAAGCAGAATGGTTTTAAGCACGATCATCAAGGGTTTGCGGTTCGGTTCATTGTGGGAGCTGCCTTGCCGGACCGGTCGCAGAGGGCCGCAACATGGCCCGGCGATTTGGCTGTGATGCGAAGACCCTGGGGGCGCTTCGCACC > NC_002947/2302364‑2302509 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |