| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4290153 = | 87 (1.170) | 6 (0.080) | 4/246 | NT | 7.6% | coding (2478/3468 nt) | PP_3761 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 4290201 = | 61 (0.840) | coding (2430/3468 nt) | PP_3761 | two‑component system sensor histidine kinase/response regulator | |||||
TGGGCTATAGCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4290277‑4290153‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATT > NC_002947/4290201‑4290330 TGGGCTATAGCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCA > 1:411710/1‑124TGGGCTATAGCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCA < 2:411710/124‑1 TGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCATCTCATGG < 2:1019600/132‑1 TGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGG > 1:1019600/1‑132 TGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGG > 1:1518352/1‑132 TGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGG < 2:1518352/132‑1 TGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGGATGGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGGCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGG > 2:977450/1‑150 CGGGCCTGACTGTCCTGCAGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATT < 1:977450/150‑1 TGGGCTATAGCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4290277‑4290153‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATT > NC_002947/4290201‑4290330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |