| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4393957 | 58 (0.780) | 5 (0.070) | 5/238 | NT | 7.7% | coding (1059/1488 nt) | PP_3869 | sheath protein |
| ? | NC_002947 | = 4393980 | 66 (0.940) | coding (1036/1488 nt) | PP_3869 | sheath protein | |||||
CGTACTTGCTGGTGATTCGCCCCTTAAGGAAATTGATGATGTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCC‑‑‑GCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4393803‑4393957‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑c‑‑‑gctgctgACCCATGGCATTGCCACGGGCTACAGCAGCGGCGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGGGTCAGCCCGACAATTCATTCCTGGACAGCGAGACGCTGCATCAGTCGGCCTACATCATCAATTT < NC_002947/4393980‑4393832 CGTAGTTGCTGGTGATTCGCCCCTTAAGGAAATTGAGGATGTAGGCCGACTGATGCAGCGTCTCGCGGTCCAGGAATGAATGGTCGGGCTGACCCAGAGCGTGCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCC‑‑‑GC < 2:467443/150‑1 ACTTGCTGGTGATTCGCCCCTTAAGGAAATTGATGATGTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCC‑‑‑GCTGC < 2:3631/150‑1 GATGTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCC‑‑‑GCTGCTGACCCATGGCATTGCCACGGGCTACAGCAGCGG < 2:1473422/150‑1 CAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCC‑‑‑GCTGCTGACCCATGGCATTGCCACGGGCTACAG < 1:1269716/111‑1 CAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCC‑‑‑GCTGCTGACCCATGGCATTGCCACGGGCTACAG > 2:1269716/1‑111 CCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGCTGACCCATGGTATTGCCACGGGCTACAGCAGCGGCGG > 1:1282447/1‑100 CCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCCGCTGCTGCTGACCCATGGTATTGCCACGGGCTACAGCAGCGGCGG < 2:1282447/100‑1 C‑‑‑GCTGCTGACCCATGGCATTGCCACGGGCTACAGCAGCGGCGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGGGTCAGCCCGACAATTCATTCCTGGACAGCGAGACGCTGCATCAGTCGGCCTACATCA > 2:902951/1‑150 ctaCTGACCCATGGCATTGCCACGGGCTACAGCAGCGGCGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGGGTCAGCCCGACAATTCATTCCTGGACAGCGAGACGCTGCATCAGTCGGCCTACATCATC > 1:833644/4‑150 TGCTGACCCATGGCATTGCCACGGGCTACAGCAGCGGCGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGGGTCAGCCCGACAATTCATTCCTGGACAGCGAGACGCTGCATCAGTCGGCCTACATCATCA > 2:1494521/1‑150 TGACCCATGGCATTGCCACGGGCTACAGCAGCGGCGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGGGTCAGCCCGACAATTCATTCCTGGACAGCGAGACGCTGCATCAGTCGGCCTACATCATCAATT < 2:1832468/150‑1 GACCCATGGCATTGCCACGGGCTACAGCAGCGGCGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGGGTCAGCCCGACAATTCATTCCTGGACAGCGAGACGCTGCATCAGTCGGCCTACATCATCAATTT > 1:1885068/1‑150 CGTACTTGCTGGTGATTCGCCCCTTAAGGAAATTGATGATGTAGGCCGACTGATGCAGCGTCTCGCTGTCCAGGAATGAATTGTCGGGCTGACCCAGAGCGTTCTGCCGGTATGTGGTGATGCCGCGCTCGATGCGCTGCACGCCGCC‑‑‑GCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4393803‑4393957‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑c‑‑‑gctgctgACCCATGGCATTGCCACGGGCTACAGCAGCGGCGGCGTGCAGCGCATCGAGCGCGGCATCACCACATACCGGCAGAACGCTCTGGGTCAGCCCGACAATTCATTCCTGGACAGCGAGACGCTGCATCAGTCGGCCTACATCATCAATTT < NC_002947/4393980‑4393832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |