| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4933273 = | 86 (1.150) | 7 (0.100) | 5/246 | NT | 7.9% | coding (1221/1308 nt) | flhF | flagellar biosynthesis protein FlhF |
| ? | NC_002947 | 4933312 = | 79 (1.090) | coding (1182/1308 nt) | flhF | flagellar biosynthesis protein FlhF | |||||
TCCTGACCAAACTCGATGAAACGGCAAGCCTTGGCGATGTGTTGAGCCTTGCCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4933424‑4933273‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCGGCCAGGCCACAGCGCTTGTAGCTGTGGT > NC_002947/4933312‑4933460 TCCTGACCAAACTCGATGAAACGGCAAGCCTTGGCGATGTGTTGAGCCTTGCCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGG > 1:1530653/1‑150TCCTGACCAAACTCGATGAAACGGCAAGCCTTGGCGATGTGTTGAGCCTTGCCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCAAATGGTTTTAAAACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGG > 2:50262/1‑150 ATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTC > 1:883122/1‑124 ATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTC < 2:883122/124‑1 CTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGT > 2:1029463/1‑150 CTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGCAGGTCGTCAGGAATGCGTGGGCCATCCGCACATGAAAACACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGT > 2:543459/1‑150 CTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAA > 1:1165202/1‑107 CTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGCAGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAA < 2:1165202/107‑1 CTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGAT > 2:1059025/1‑150 GGTGCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCGGCCAGGCCACAGCGCTTGTAGCTGT < 2:1687899/150‑1 GCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCGGCCAGGCCACAGCGCTTGTAGCTGTGGT > 1:1516604/1‑150 TCCTGACCAAACTCGATGAAACGGCAAGCCTTGGCGATGTGTTGAGCCTTGCCATCAGTCATGAACTGCCAGTGGCCTATCTTACCGATGGCCCACGCATTCCTGACGACCTGCACCTGCCGCGGGGCCACCAGTTGGTCACGCGGGCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4933424‑4933273‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgCAGGTCGTCAGGAATGCGTGGGCCATCGGTAAGATAGGCCACTGGCAGTTCATGACTGATGGCAAGGCTCAACACATCGCCAAGGCTTGCCGTTTCATCGAGTTTGGTCAGGATGCAGCCGGCCAGGCCACAGCGCTTGTAGCTGTGGT > NC_002947/4933312‑4933460 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |