| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4951546 = | 78 (1.050) | 6 (0.090) | 5/238 | NT | 7.9% | coding (772/1266 nt) | fliK | flagellar hook‑length control protein FliK |
| ? | NC_002947 | 4951572 = | 66 (0.940) | coding (746/1266 nt) | fliK | flagellar hook‑length control protein FliK | |||||
GAATCTGGTCGAGGATACCGATGGCGAAAGCGCTGAATCCGGTGGCAAGGCCTTTGGTGCCTTGCTTGAAGACGGCCTGAAAGACACCAAGAGCGCCAGCAGCGACACCCGCATCGATGATTTTGCCAACCGCCT‑GGCCAGCCTGACCCAGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4951700‑4951546‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcggTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCC > NC_002947/4951572‑4951718 GAATCTGGTCGAGGATACCGATGGCGAAAGCGCTGAATCCGGTGGCAAGGCCTTTGGTGCCTTGCTTGAAGACGGCCTGAAAGACACCAAGAGCGCCAGCAGCGACACCCGCATCGATGATTTTGCCAACCGCCT‑GGCCAGCCTGACCCA > 1:577928/1‑150GAATCTGGTCGAGGATACCGATGGCGAAAGCGCTGAATCCGGTGGCAAGGCCTTTGGTGCCTTGCTTGAAGACGGCCTGAAAGACACCAAGAGCGCCAGCAGCGACACCCGCATCGATGATTTTGCCAACCGCCT‑GGCCAGCCTGACCCA < 2:1640990/150‑1 TCTGGTCGAGGATACCGATGGCGAAAGCGCTGAATCCGGTGGCAAGGCCTTTGGTGCCTTGCTTGAAGACGGCCTGAAAGACACCAAGAGCGCCAGCAGCGACACCCGCATCGATGATTTTGCCAACCGCCT‑GGCCAGCCTGACCCAGGC < 2:979245/150‑1 CGATGGCGAAAGCGCTGAATCCGGTGGCAAGGCCTTTGGTGCCTTGCTTGAAGACGGCCTGAAAGACACCAAGAGCGCCAGCAGCGACACCCGCATCGATGATTTTGCCAACCGCCTGGGTCAGGCTG‑GCCAGGCGGTTGGCAAAATCAT < 1:1301658/150‑1 AAGACGGCCTGAAAGACACCAAGAGCGCCAGCAGCGACACCCGCATCGATGATTTTGCCAACCGCCT‑GGCCAGCCTGACCCAGGCG < 1:1218738/86‑1 AAGACGGCCTGAAAGACACCAAGAGCGCCAGCAGCGACACCCGCATCGATGATTTTGCCAACCGCCT‑GGCCAGCCTGACCCAGGCG > 2:1218738/1‑86 CAACCGCCT‑GGCCAGCCTGACCCAGGCGGTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGA > 2:360849/1‑150 CAACCGCCT‑GGCCAGCCTGACCCAGGCGGTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGG > 1:591593/1‑99 CAACCGCCT‑GGCCAGCCTGACCCAGGCGGTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGG < 2:591593/99‑1 CGCCT‑GGCCAGCCTGACCCAGGCGGTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCA > 1:1795317/1‑121 CGCCT‑GGCCAGCCTGACCCAGGCGGTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCA < 2:1795317/121‑1 AGGCGGTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACG < 1:759246/150‑1 GCGGTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGC > 1:1163746/1‑150 CGGTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCC < 1:1691046/150‑1 GTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTC > 1:573125/1‑105 GTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTC < 2:573125/105‑1 GAATCTGGTCGAGGATACCGATGGCGAAAGCGCTGAATCCGGTGGCAAGGCCTTTGGTGCCTTGCTTGAAGACGGCCTGAAAGACACCAAGAGCGCCAGCAGCGACACCCGCATCGATGATTTTGCCAACCGCCT‑GGCCAGCCTGACCCAGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4951700‑4951546‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcggTTGGCAAAATCATCGATGCGGGTGTCGCTGCTGGCGCTCTTGGTGTCTTTCAGGCCGTCTTCAAGCAAGGCACCAAAGGCCTTGCCACCGGATTCAGCGCTTTCGCCATCGGTATCCTCGACCAGATTCGCCAAGGTATTGACGGCC > NC_002947/4951572‑4951718 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |