New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4978963	77 (1.030)	4 (0.060)	4/238	NT	5.4%	coding (504/786 nt)	flgG	flagellar basal‑body rod protein FlgG
	?	NC_002947	= 4978986	68 (0.970)					coding (481/786 nt)	flgG	flagellar basal‑body rod protein FlgG

AGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGAACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4978811‑4978963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatcaccACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCCTGAACGG  <  NC_002947/4978986‑4978838                                                                                                                                                                                                                                                                                                                AGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGAACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATC                                                                                                                                                          <  1:1581822/150‑1  GCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGAACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCA                                                                                                                                                         <  1:551155/150‑1            CAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCGCTGGCGGCGGTCTCGAGGAACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCACCGCCGG                                                                                                                                               >  1:685516/1‑150                                   GGCCTGGGGTGCCGACCTGAGGCGCGCCGCTGGCGGCGGTCTCGAGGAACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCACCGCCGGCAACCCGGCTGCACAGGTGATCG                                                                                                                        <  2:685516/150‑1                                                              CACTGGCGGCGGTCTCGAGGAACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCACCGCCGGCAACCCGGCTGCACAGGTGATCGG                                                                                                                       >  1:399103/1‑124                                                              CACTGGCGGCGGTCTCGAGGAACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCACCGCCGGCAACCCGGCTGCACAGGTGATCGG                                                                                                                       <  2:399103/124‑1                                                                              GAGGAACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCC                                                                                                                                                              >  1:1877208/1‑69                                                                              GAGGAACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCC                                                                                                                                                              <  2:1877208/69‑1                                                                                                                                                     TCACCACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAG                         >  1:438827/1‑131                                                                                                                                                     TCACCACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAG                         <  2:438827/131‑1                                                                                                                                                      ccCCACCGCCGGCAACAAGGCCGCACGGGTGTTCGGCAACATCCAGACCGCCTACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCCTGAA     <  2:1854040/148‑1                                                                                                                                                       ACCACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTC                                                    <  1:1491652/102‑1                                                                                                                                                       ACCACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTC                                                    >  2:1491652/1‑102                                                                                                                                                         CACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCCGGCGATCGGCGACAACCTGGTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCCTGAACGG  >  1:270236/1‑150                                                                                                                                                                                                                                                                                                                AGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGAACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4978811‑4978963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatcaccACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCCTGAACGG  <  NC_002947/4978986‑4978838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.